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Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 578 191

  2. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 174 123

  3. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 155 25

  4. ensembl-rest ensembl-rest Public archive

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 149 63

  5. ensembl ensembl Public archive

    The Ensembl Core Perl API and SQL schema

    Perl 85 78

  6. ensembl-pipeline ensembl-pipeline Public archive

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 62 29

Repositories

Showing 10 of 218 repositories
  • ensembl-client Public

    The frontend of the new Ensembl website

    Ensembl/ensembl-client's past year of commit activity
    TypeScript 17 Apache-2.0 4 0 6 Updated Nov 2, 2026
  • Ensembl/ensembl-genes-metadata's past year of commit activity
    TypeScript 1 Apache-2.0 3 3 4 Updated Nov 2, 2026
  • ensembl-genes-nf Public

    Ensembl Genebuild NextFlow pipelines

    Ensembl/ensembl-genes-nf's past year of commit activity
    Nextflow 2 6 0 3 Updated Nov 2, 2026
  • Ensembl/ensembl-vep-py's past year of commit activity
    Python 0 Apache-2.0 0 0 22 Updated Nov 2, 2026
  • ensembl-analysis Public

    Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

    Ensembl/ensembl-analysis's past year of commit activity
    Perl 18 Apache-2.0 36 0 2 Updated Nov 2, 2026
  • ensembl-taxonomy Public

    API for accessing NCBI taxonomy

    Ensembl/ensembl-taxonomy's past year of commit activity
    Perl 1 Apache-2.0 3 0 0 Updated Nov 2, 2026
  • ensembl-genomio Public

    Pipelines to turn basic genomic data into Ensembl cores and back

    Ensembl/ensembl-genomio's past year of commit activity
    Python 10 Apache-2.0 13 0 7 Updated Nov 2, 2026
  • ensembl-utils Public

    Ensembl python utils

    Ensembl/ensembl-utils's past year of commit activity
    Python 6 Apache-2.0 4 0 1 Updated Nov 1, 2026
  • ensembl-genes Public

    Python Ensembl Gene Annotation code source repository

    Ensembl/ensembl-genes's past year of commit activity
    Python 4 Apache-2.0 4 0 6 Updated Nov 1, 2026
  • Ensembl/ensembl-genes-containers's past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 1 Updated Oct 30, 2026