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  1. TackleBox TackleBox Public

    TackleBox is a collection of module tools for targeted ancient DNA research.

    Python

  2. RxSexID RxSexID Public

    RxSexID infers biological sex from mapped reads using the Rx statistic (Skoglund et al. 2013): the ratio of X-chromosome coverage to an autosomal baseline for ancient and degraded DNA

    Python

  3. PalaeoKin PalaeoKin Public

    PalaeoKin is a lightweight ancient-DNA pipeline for estimating pairwise relatedness from mapped BAMs at low/uneven coverage. It wraps ANGSD + NgsRelate (KING-robust kinship, R0/R1) and samtools, pr…

    Shell

  4. Workbench Workbench Public

    A semi-random collection of small, useful tools for ancient DNA bioinformatics, plotting, and file summaries.

    Python