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docs: generalize tRNA-charging framing to a worked example (#350) Deploy Documentation #291: Commit 75232f6 pushed by jayhesselberth
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fix(features): encode_signal_kmer fallback skips missing context inst… Deploy Documentation #290: Commit 5bfdf3c pushed by jayhesselberth
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fix(splitting): block-stream the CSR base-to-signal map gather in mer… Deploy Documentation #289: Commit 3fe2d1b pushed by jayhesselberth
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fix(prepare): key seq_to_sig_map off the placed window, not the pre-c… Deploy Documentation #288: Commit 27f64d8 pushed by jayhesselberth
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feat(predict): implement signal-context-bases on Rust inference path … Deploy Documentation #287: Commit 668a8e5 pushed by jayhesselberth
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fix(train): interrupt-safe --resume via a rolling model_resume.pt (#3… Deploy Documentation #286: Commit f27c29f pushed by jayhesselberth
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fix(prepare): don't count reads absent from a pre-filtered POD5 as fa… Deploy Documentation #285: Commit 1b82e71 pushed by jayhesselberth
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fix(merge): track chunk provenance instead of re-deriving group membe… Deploy Documentation #284: Commit cff6b69 pushed by jayhesselberth
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fix(train): drop selection_metric from --model-config before model co… Deploy Documentation #283: Commit a96079d pushed by jayhesselberth
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chore: release v0.12.0 Deploy Documentation #282: Commit 715641b pushed by jayhesselberth
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fix(bam): accept lowercase cl charging-level tag alongside CL (#317) Deploy Documentation #281: Commit ebaebc4 pushed by jayhesselberth
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feat(prepare): mask sequence-branch bases on one side of the focus ba… Deploy Documentation #280: Commit 725f638 pushed by jayhesselberth
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fix(dataset): warn on silent zero-pad crop windows (#319) Deploy Documentation #279: Commit ba07dab pushed by jayhesselberth
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feat(dataset): time-stretch augmentation for speed invariance (#316) Deploy Documentation #278: Commit 3e9aa11 pushed by jayhesselberth
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feat(training,models): add symmetric TCN padding and feature standard… Deploy Documentation #277: Commit 2df5bfd pushed by jayhesselberth
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feat: junction-disruption chunk field and predict abstention rule (#315) Deploy Documentation #276: Commit a1b0ab7 pushed by jayhesselberth
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feat(prepare): base-defined signal window (--signal-context-bases) (#… Deploy Documentation #275: Commit 92303bc pushed by jayhesselberth
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feat(training): checkpoint selection and loss shaping for low-FPR reg… Deploy Documentation #274: Commit 7313131 pushed by jayhesselberth
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feat(training): add noise_corrected_bce loss for known label-noise ra… Deploy Documentation #273: Commit a12bed5 pushed by jayhesselberth
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refactor(signal_refine): remove never-run DP reference path and inert… Deploy Documentation #272: Commit beb9f2d pushed by jayhesselberth
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fix: unify predict's config resolution and chunk extraction (#269, #2… Deploy Documentation #271: Commit 8f24f42 pushed by jayhesselberth
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perf(dataset,training): batch signal_kmer encoding + training hot-pat… Deploy Documentation #270: Commit a478e6c pushed by jayhesselberth
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refactor(training): unify the recipe into one TrainConfig (#270) (#303) Deploy Documentation #269: Commit 5d1a34e pushed by jayhesselberth
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refactor(prepare): unify dispatch, init worker pool once per worker (… Deploy Documentation #268: Commit f3e9ccb pushed by jayhesselberth
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fix(models): derive requires_features/wide_features/vmap-compat struc… Deploy Documentation #267: Commit 40b253e pushed by jayhesselberth
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