Repositories list

• dockerized_mts

  Public
  R

  •55 forks•77 stars•00 issues•00 pull requests•Updated Sep 1, 2026Sep 1, 2026

• cmapPy

  Public
  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

  genegeneticspandas+ 3

  genegeneticspandasgctgctxgrp

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •7777 forks•145145 stars•2121 issues•00 pull requests•Updated Aug 26, 2026Aug 26, 2026

• cup

  Public
  QC module for Luminex based PRISM data

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 14, 2024Aug 14, 2024

• morpheus.js

  Public
  JavaScript matrix visualization and analysis

  visualizationjavascriptchart+ 3

  visualizationjavascriptchartstatisticsheatmapmatrix

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2323 forks•6868 stars•88 issues•33 pull requests•Updated Aug 1, 2024Aug 1, 2024

• slice-reports

  Public
  TypeScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2024May 15, 2024

• submission_hub

  Public
  HTML/CSS of new design to be used in clue

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2023Sep 25, 2023

• panel

  Public
  QC app implemented in panel

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2023Aug 29, 2023

• prism_lumitracker

  Public
  Updated version of lumitracker qc figure generation for PRISM

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2023Apr 11, 2023

• ctg

  Public
  Sync and sort data for use with the CTG app

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2023Feb 17, 2023

• demo-portal-logn

  Public
  Vue

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 24, 2023Jan 24, 2023

• merino

  Public
  Pre-publication data flow for PRISM multiplex cell viability assay

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•33 stars•44 issues•00 pull requests•Updated Aug 24, 2022Aug 24, 2022

• cmapBQ

  Public
  Python

  •

  MIT License

  •44 forks•77 stars•33 issues•00 pull requests•Updated Mar 1, 2022Mar 1, 2022

• CTG_pipeline

  Public archive
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 17, 2021Dec 17, 2021

• cmapM

  Public
  Connectivity Map analysis in MATLAB

  C

  •

  BSD 3-Clause "New" or "Revised" License

  •1818 forks•5151 stars•55 issues•00 pull requests•Updated Dec 10, 2021Dec 10, 2021

• CTE

  Public
  What the Package Does (One Line, Title Case)

  HTML

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 15, 2021Nov 15, 2021

• lincs-cell-painting

  Public
  Processed Cell Painting Data for the LINCS Drug Repurposing Project

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1414 forks•00 stars•00 issues•00 pull requests•Updated Oct 27, 2021Oct 27, 2021

• cmapR

  Public
  Tools for manipulating annotated data matrices

  bioinformaticsbioconductorcmap

  bioinformaticsbioconductorcmap

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •3838 forks•9595 stars•1111 issues•00 pull requests•Updated Oct 13, 2021Oct 13, 2021

• lincs-workshop-2020

  Public
  CMap Notebooks for LINCS 2020 Workshop

  Jupyter Notebook

  •2323 forks•5252 stars•11 issue•00 pull requests•Updated Sep 23, 2021Sep 23, 2021

• cmap-sig-tools

  Public
  Reference documentation and usage notes for core CMap tools.

  Shell

  •00 forks•11 star•33 issues•00 pull requests•Updated Jan 5, 2021Jan 5, 2021

• psp

  Public
  Python scripts for data processing and analysis of P100 and GCP data

  pythonproteomicscmappy

  pythonproteomicscmappy

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •77 forks•1010 stars•44 issues•00 pull requests•Updated Dec 23, 2020Dec 23, 2020

• deconv

  Public
  Repo for paper: "Improving Deconvolution Methods in Biology"

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 3, 2020Nov 3, 2020

• morpheus.R

  Public
  R interface to morpheus.js heatmap widget

  visualizationjavascriptchart+ 2

  visualizationjavascriptchartrheatmap

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •1414 forks•4040 stars•77 issues•00 pull requests•Updated Oct 22, 2020Oct 22, 2020

• gene_deconvolution_challenge

  Public
  Source code for the top finishers from the CMap Gene Deconvolution challenge

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 22, 2020Oct 22, 2020

• mts_biomarker

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 14, 2020Oct 14, 2020

• pestle_tools

  Public
  SigTools in Python

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 11, 2020May 11, 2020

• sig_xicon

  Public
  sig_xicon jobs on aws batch

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2020Feb 14, 2020

• morpheus-export

  Public
  export static heat maps using Morpheus.js

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 14, 2019Nov 14, 2019

• jupyterhub

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 13, 2019Nov 13, 2019

• cmap_notebooks

  Public
  CMAP public jupyter notebooks

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 13, 2019Nov 13, 2019

• GCT2BQ

  Public
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 14, 2019Sep 14, 2019