Repositories list

• caltech-curation-services

  Public

  WormBase/caltech-curation-services’s past year of commit activity
  Modular curation services for Caltech WormBase data

  Perl

  •00 forks in WormBase/caltech-curation-services•11 star in WormBase/caltech-curation-services•2222 issues in WormBase/caltech-curation-services•00 pull requests in WormBase/caltech-curation-services•Updated Oct 28, 2026Oct 28, 2026

• ACKnowledge

  Public

  WormBase/ACKnowledge’s past year of commit activity
  Author Curation to Knowledgebases

  JavaScript

  •

  MIT License

  •11 fork in WormBase/ACKnowledge•33 stars in WormBase/ACKnowledge•4848 issues in WormBase/ACKnowledge•1515 pull requests in WormBase/ACKnowledge•Updated Oct 21, 2026Oct 21, 2026

• entity-extraction-expression-cluster

  Public

  WormBase/entity-extraction-expression-cluster’s past year of commit activity
  Python

  •00 forks in WormBase/entity-extraction-expression-cluster•00 stars in WormBase/entity-extraction-expression-cluster•00 issues in WormBase/entity-extraction-expression-cluster•00 pull requests in WormBase/entity-extraction-expression-cluster•Updated Oct 2, 2026Oct 2, 2026

• entity-extraction-email-addresses

  Public

  WormBase/entity-extraction-email-addresses’s past year of commit activity
  Python

  •00 forks in WormBase/entity-extraction-email-addresses•00 stars in WormBase/entity-extraction-email-addresses•00 issues in WormBase/entity-extraction-email-addresses•00 pull requests in WormBase/entity-extraction-email-addresses•Updated Oct 1, 2026Oct 1, 2026

• wbtools

  Public

  WormBase/wbtools’s past year of commit activity
  Interface to WB curation data, with corpus management and NLP functions

  Python

  •

  MIT License

  •00 forks in WormBase/wbtools•33 stars in WormBase/wbtools•33 issues in WormBase/wbtools•00 pull requests in WormBase/wbtools•Updated Oct 1, 2026Oct 1, 2026

• entity-extraction-transgene

  Public

  WormBase/entity-extraction-transgene’s past year of commit activity
  Python

  •00 forks in WormBase/entity-extraction-transgene•00 stars in WormBase/entity-extraction-transgene•22 issues in WormBase/entity-extraction-transgene•00 pull requests in WormBase/entity-extraction-transgene•Updated Oct 1, 2026Oct 1, 2026

• SObA

  Public

  WormBase/SObA’s past year of commit activity
  Graph Summary of Ontology-based Annotation

  Perl

  •00 forks in WormBase/SObA•11 star in WormBase/SObA•00 issues in WormBase/SObA•00 pull requests in WormBase/SObA•Updated Jun 8, 2026Jun 8, 2026

• WormMine

  Public

  WormBase/WormMine’s past year of commit activity
  Java

  •00 forks in WormBase/WormMine•00 stars in WormBase/WormMine•00 issues in WormBase/WormMine•00 pull requests in WormBase/WormMine•Updated Apr 29, 2026Apr 29, 2026

• amplify-wb-jbrowse2

  Public

  WormBase/amplify-wb-jbrowse2’s past year of commit activity
  An AWS Amplify oriented repo for building WormBase's JBrowse 2

  JavaScript

  •

  MIT License

  •00 forks in WormBase/amplify-wb-jbrowse2•00 stars in WormBase/amplify-wb-jbrowse2•00 issues in WormBase/amplify-wb-jbrowse2•00 pull requests in WormBase/amplify-wb-jbrowse2•Updated Apr 28, 2026Apr 28, 2026

• wormmine-bio-sources

  Public

  WormBase/wormmine-bio-sources’s past year of commit activity
  Java

  •00 forks in WormBase/wormmine-bio-sources•11 star in WormBase/wormmine-bio-sources•00 issues in WormBase/wormmine-bio-sources•00 pull requests in WormBase/wormmine-bio-sources•Updated Apr 26, 2026Apr 26, 2026

• interolog_prediction

  Public

  WormBase/interolog_prediction’s past year of commit activity
  interolog prediction with AGR orthology

  JavaScript

  •

  MIT License

  •00 forks in WormBase/interolog_prediction•00 stars in WormBase/interolog_prediction•00 issues in WormBase/interolog_prediction•00 pull requests in WormBase/interolog_prediction•Updated Feb 27, 2026Feb 27, 2026

• website-public

  Public

  WormBase/website-public’s past year of commit activity
  WormBase webiste source code public mirror

  HTML

  •1111 forks in WormBase/website-public•33 stars in WormBase/website-public•11 issue in WormBase/website-public•3939 pull requests in WormBase/website-public•Updated Jan 10, 2026Jan 10, 2026

• wormbase_rest

  Public

  WormBase/wormbase_rest’s past year of commit activity
  This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.

  Clojure

  •

  GNU General Public License v2.0

  •22 forks in WormBase/wormbase_rest•88 stars in WormBase/wormbase_rest•66 issues in WormBase/wormbase_rest•00 pull requests in WormBase/wormbase_rest•Updated Jan 8, 2026Jan 8, 2026

• wormbase-pipeline

  Public

  WormBase/wormbase-pipeline’s past year of commit activity
  Wormbase Build Pipeline

  Perl

  •1313 forks in WormBase/wormbase-pipeline•2222 stars in WormBase/wormbase-pipeline•1111 issues in WormBase/wormbase-pipeline•00 pull requests in WormBase/wormbase-pipeline•Updated Jan 7, 2026Jan 7, 2026

• wormbase-mcp

  Public

  WormBase/wormbase-mcp’s past year of commit activity
  TypeScript

  •

  MIT License

  •00 forks in WormBase/wormbase-mcp•00 stars in WormBase/wormbase-mcp•00 issues in WormBase/wormbase-mcp•00 pull requests in WormBase/wormbase-mcp•Updated Dec 12, 2025Dec 12, 2025

• amplify-wb-jbrowse1

  Public

  WormBase/amplify-wb-jbrowse1’s past year of commit activity
  Repo to drive AWS Amplify builds for JBrowse 1

  JavaScript

  •

  MIT License

  •00 forks in WormBase/amplify-wb-jbrowse1•00 stars in WormBase/amplify-wb-jbrowse1•00 issues in WormBase/amplify-wb-jbrowse1•00 pull requests in WormBase/amplify-wb-jbrowse1•Updated Dec 12, 2025Dec 12, 2025

• website-genome-browsers

  Public

  WormBase/website-genome-browsers’s past year of commit activity
  Perl

  •

  MIT License

  •00 forks in WormBase/website-genome-browsers•11 star in WormBase/website-genome-browsers•11 issue in WormBase/website-genome-browsers•22 pull requests in WormBase/website-genome-browsers•Updated Dec 10, 2025Dec 10, 2025

• website-jbrowse-gff

  Public

  WormBase/website-jbrowse-gff’s past year of commit activity
  Dockerfile for processing GFF data for JBrowse

  Shell

  •

  MIT License

  •00 forks in WormBase/website-jbrowse-gff•00 stars in WormBase/website-jbrowse-gff•11 issue in WormBase/website-jbrowse-gff•00 pull requests in WormBase/website-jbrowse-gff•Updated Dec 9, 2025Dec 9, 2025

• wormmine_testing

  Public
  Small web app that automatically tests releases

  Python

  •00 forks in WormBase/wormmine_testing•11 star in WormBase/wormmine_testing•00 issues in WormBase/wormmine_testing•00 pull requests in WormBase/wormmine_testing•Updated Dec 2, 2025Dec 2, 2025

• wormicloud

  Public
  Interaction data analysis with word clouds

  JavaScript

  •00 forks in WormBase/wormicloud•22 stars in WormBase/wormicloud•88 issues in WormBase/wormicloud•11 pull request in WormBase/wormicloud•Updated Nov 18, 2025Nov 18, 2025

• huggingface-document-classifier

  Public
  Python

  •00 forks in WormBase/huggingface-document-classifier•00 stars in WormBase/huggingface-document-classifier•00 issues in WormBase/huggingface-document-classifier•00 pull requests in WormBase/huggingface-document-classifier•Updated Sep 29, 2025Sep 29, 2025

• gc-anatomy-function

  Public
  Graphical curation tool for anatomy function

  JavaScript

  •00 forks in WormBase/gc-anatomy-function•00 stars in WormBase/gc-anatomy-function•22 issues in WormBase/gc-anatomy-function•00 pull requests in WormBase/gc-anatomy-function•Updated Aug 19, 2025Aug 19, 2025

• names

  Public
  Names and identifiers service for facilitating collaboration between curation databases

  Clojure

  •11 fork in WormBase/names•11 star in WormBase/names•11 issue in WormBase/names•55 pull requests in WormBase/names•Updated Jul 30, 2025Jul 30, 2025

• wb-apollo

  Public
  Shell

  •00 forks in WormBase/wb-apollo•00 stars in WormBase/wb-apollo•00 issues in WormBase/wb-apollo•00 pull requests in WormBase/wb-apollo•Updated Jul 11, 2025Jul 11, 2025

• amplify-wb-prot-schematic

  Public
  Repo to drive AWS Amplify builds for the protein browser

  JavaScript

  •

  MIT License

  •00 forks in WormBase/amplify-wb-prot-schematic•00 stars in WormBase/amplify-wb-prot-schematic•00 issues in WormBase/amplify-wb-prot-schematic•00 pull requests in WormBase/amplify-wb-prot-schematic•Updated Jul 9, 2025Jul 9, 2025

• website-jbrowse-protein

  Public
  Dockerfile for building protein schematic

  Shell

  •

  MIT License

  •00 forks in WormBase/website-jbrowse-protein•00 stars in WormBase/website-jbrowse-protein•00 issues in WormBase/website-jbrowse-protein•00 pull requests in WormBase/website-jbrowse-protein•Updated May 28, 2025May 28, 2025

• huggingface-biosentence-classifier

  Public
  Python

  •

  MIT License

  •00 forks in WormBase/huggingface-biosentence-classifier•00 stars in WormBase/huggingface-biosentence-classifier•00 issues in WormBase/huggingface-biosentence-classifier•00 pull requests in WormBase/huggingface-biosentence-classifier•Updated May 9, 2025May 9, 2025

• pseudoace

  Public
  Modelling the WormBase ACeDB database in datomic.

  Clojure

  •33 forks in WormBase/pseudoace•44 stars in WormBase/pseudoace•66 issues in WormBase/pseudoace•11 pull request in WormBase/pseudoace•Updated Mar 31, 2025Mar 31, 2025

• wb_file_generator

  Public
  This file will be mainly used to generate files for populating WormMine

  Clojure

  •

  MIT License

  •11 fork in WormBase/wb_file_generator•11 star in WormBase/wb_file_generator•00 issues in WormBase/wb_file_generator•00 pull requests in WormBase/wb_file_generator•Updated Feb 20, 2025Feb 20, 2025

• curation-sentence-classification

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in WormBase/curation-sentence-classification•00 stars in WormBase/curation-sentence-classification•11 issue in WormBase/curation-sentence-classification•00 pull requests in WormBase/curation-sentence-classification•Updated Dec 9, 2024Dec 9, 2024