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@SCIInstitute The Scientific Computing and Imaging Institute

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    67 repositories

    • fluorender

      Public
      FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis
      C++
      •
      Other
      •11•47•0•0•Updated Apr 8, 2026Apr 8, 2026

    • SCIRun

      Public
      SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4…
      visualizationpythonopen-source
      visualizationpythonopen-sourcec-plus-pluscmakeqt5boost-librariesscientific-visualizationscientific-computingmesh-generation
      C++
      •
      Other
      •74•137•376•3•Updated Apr 7, 2026Apr 7, 2026

    • ShapeWorks

      Public
      ShapeWorks
      C++
      •
      Other
      •35•129•202•5•Updated Apr 5, 2026Apr 5, 2026

    • MULTI-website

      Public
      TeX
      •2•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • DBSpipeline

      Public
      simulation pipeline for DBS stimulation and RNS stimulation
      Python
      •
      MIT License
      •0•0•12•0•Updated Mar 31, 2026Mar 31, 2026

    • UncertainSCI

      Public
      Python
      •
      MIT License
      •11•11•23•0•Updated Mar 22, 2026Mar 22, 2026

    • Seg3D

      Public
      Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Co…
      C++
      •46•120•134•3•Updated Jan 15, 2026Jan 15, 2026

    • ITKCleaver

      Public
      Wrapper for Cleaver to use as an ITK filter
      pythonc-plus-plusitk
      pythonc-plus-plusitkitk-module
      C++
      •
      MIT License
      •4•4•10•7•Updated Nov 15, 2025Nov 15, 2025

    • PFEIFER

      Public
      Signal processing toolbox for cardiac potential recordings.
      signal-processingecg-signalelectrocardiography
      signal-processingecg-signalelectrocardiographyecg-imaging
      MATLAB
      •
      MIT License
      •7•3•5•0•Updated Feb 18, 2025Feb 18, 2025

    • PublicationSystemHackathon

      Public
      Collaborative effort to build a better publication tracking and recording system
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • DeveloperTools

      Public
      This repo contains scripts that download and report download stats on other github repos.
      Inno Setup
      •0•1•1•0•Updated Dec 3, 2024Dec 3, 2024

    • CIP-CoOp

      Public
      repo for CIP CoOP information and webpages
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Oct 29, 2024Oct 29, 2024

    • scix-map

      Public
      JavaScript
      •2•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • ShapeworksSlicerExtension

      Public
      Python
      •
      MIT License
      •0•0•3•0•Updated Jan 30, 2024Jan 30, 2024

    • Tuvok

      Public
      GPU-accelerated, out-of-core volume rendering library.
      C++
      •15•20•0•1•Updated Nov 10, 2023Nov 10, 2023

    • ImageVis3D

      Public
      An out-of-core volumetric rendering application.
      C++
      •
      Other
      •37•96•5•1•Updated Nov 10, 2023Nov 10, 2023

    • FwdInvToolkit

      Public
      Forward/Inverse Toolkit
      MATLAB
      •14•8•31•2•Updated Sep 15, 2023Sep 15, 2023

    • BrainStimulator

      Public
      BrainStimulator is a software package to simulate (transcranial) brain stimulation and is implemented in the scientific problem solving environment that SCIRun …
      Python
      •6•8•0•0•Updated Jun 28, 2023Jun 28, 2023

    • VTKCleaver

      Public
      Wrapper for Cleaver to use as a VTK filter
      pythonc-plus-plusvtk
      pythonc-plus-plusvtkvtk-module
      C++
      •
      MIT License
      •3•0•1•3•Updated May 18, 2023May 18, 2023

    • Cleaver

      Public
      A MultiMaterial Tetrahedral Meshing Library and Application
      C
      •
      Other
      •18•43•32•1•Updated May 14, 2023May 14, 2023

    • Cleaver1

      Public archive
      :warning: OBSOLETE | A MultiMaterial Tetrahedral Meshing Library and Application
      obsolete
      obsolete
      C
      •1•1•7•0•Updated May 12, 2023May 12, 2023

    • cleaver.pages

      Public
      This project hosts and serves the doxygen-generated C++ API documentation for Cleaver.
      meshing
      meshing
      HTML
      •1•1•1•0•Updated May 12, 2023May 12, 2023

    • UncertainSCI-web-demo

      Public
      This is a demonstration of UncertainSCI deployed on the web
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 22, 2023Apr 22, 2023

    • ImplicitModelExample

      Public
      Example for using the implicit model tool in Seg3D to make a surface from points.
      MIT License
      •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • dSpaceX

      Public
      dSpaceX Visualization Library and Tool
      C++
      •2•5•116•10•Updated Dec 29, 2022Dec 29, 2022

    • DiffractionClassification

      Public
      An open service to classify diffraction patterns
      Python
      •
      MIT License
      •4•12•0•0•Updated May 19, 2022May 19, 2022

    • scirun.pages

      Public
      Web pages for SCIRun
      CSS
      •9•0•6•2•Updated Mar 25, 2022Mar 25, 2022

    • UQExampleBEMHeartPosition

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 11, 2022Mar 11, 2022

    • UncertainSCI-trame-demos

      Public
      web app with demos of UncertainSCI
      pythonwebappuncertainty-quantification
      pythonwebappuncertainty-quantificationcomputer-simulation-and-modeling
      Python
      •
      MIT License
      •1•1•2•0•Updated Mar 10, 2022Mar 10, 2022

    • seg3d.pages

      Public
      Web pages for Seg3D
      HTML
      •2•0•1•0•Updated May 26, 2021May 26, 2021
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