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Pull requests: nf-core/rnaseq
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Bisect salmon bam fasta mismatch
#1809
opened Apr 19, 2026 by
edmundmiller
Contributor
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11 tasks
fix: filter Trim Galore reads before fq lint
#1808
opened Apr 19, 2026 by
edmundmiller
Contributor
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feat(bowtie2_salmon): report up to -k 200 alignments so Salmon EM can work
#1806
opened Apr 18, 2026 by
pinin4fjords
Member
•
Draft
4 tasks
fix(mqc): strandedness table rows reflect which analyses ran; narrow prokaryotic RSeQC skip
#1805
opened Apr 18, 2026 by
pinin4fjords
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Draft
fix(prokaryotic): skip StringTie by default in the prokaryotic profile
#1804
opened Apr 18, 2026 by
pinin4fjords
Member
•
Draft
2 tasks
fix: per-sample MultiQC progressive closure via structural .join chain
#1803
opened Apr 18, 2026 by
pinin4fjords
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Draft
Bump version to 3.25.0 ahead of release
#1799
opened Apr 17, 2026 by
pinin4fjords
Member
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2 tasks
Test: TrimGalore v2.0 (Oxidized Edition) container
#1789
opened Apr 13, 2026 by
FelixKrueger
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Draft
7 tasks
Add Parabricks resource configuration guide for full-size genomes
#1775
opened Apr 8, 2026 by
pinin4fjords
Member
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2 tasks
docs: Refactor usage docs into user-centric multi-page structure
#1742
opened Mar 4, 2026 by
adamrtalbot
Contributor
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Draft
chore: Update nf-schema to 2.6.1 for strict syntax compatibility
#1680
opened Jan 23, 2026 by
pinin4fjords
Member
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1 of 2 tasks
Correct typos in rnaseq DE analysis docs
#1569
opened Jun 10, 2025 by
johnvusich
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2 tasks done
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