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Bump bcftools to 1.25 - #13480

Merged

matthdsm merged 22 commits into

masterfrom

bump/bcftools-1.25

Oct 28, 2026

Merged

Bump bcftools to 1.25#13480
matthdsm merged 22 commits into
masterfrom
bump/bcftools-1.25

Commits on Oct 27, 2026
- bump bcftools/htslib to 1.25 in env files
  matthdsm
  committed
  78f53ed
Commits on Oct 28, 2026
- Update subworkflow tags
  matthdsm
  committed
  48fe8a5
- bcftools: bump containers
  matthdsm
  committed
  eaccaf2
- bump htslib to 1.25
  matthdsm
  committed
  8c0c752
- bump bcftools module snaps
  matthdsm
  committed
  cff52eb
- bump htslib module snaps
  matthdsm
  committed
  afddc20
- Add license header text to all modules and subworkflow main.nf files (#13448)
  
  jfy133
  and
  matthdsm
  committed
  df23e04
- fix: remove nextflow shebang lines which break lint (#13472)
  
  awgymer
  authored and
  matthdsm
  committed
  3605fba
- fix typo (#13470)
  
  bounlu
  authored and
  matthdsm
  committed
  2d86750
- Use environment variables for test data base paths (#13474)
  matthdsm
  committed
  db1a357
- new module: longphase/modcall (#13388)
  
  authored and
  matthdsm
  committed
  101eaa4
- align NXF_VER and NFT_VER across CI (#13477)
  matthdsm
  committed
  79cc2c2
- Update pre-commit hooks (#13479)
  
  renovate[bot]
  authored and
  matthdsm
  committed
  8870f02
- Add raxmlng/evaluate: optimise branch lengths and model on a fixed tree (#13475)
  
  authored and
  matthdsm
  committed
  32d9138
- Add raxmlng/moose: RAxML-NG model selection without a tree search (#13476)
  
  authored and
  matthdsm
  committed
  f5e4617
- Merge branch 'master' into bump/bcftools-1.25
  matthdsm
  authored
  a6a9d1a
- update plotvcfstats snap
  matthdsm
  committed
  5228b83
- fix everything ngscheckmate
  matthdsm
  committed
  4a67329
- fix linting
  matthdsm
  committed
  0b6005e
- final touches
  matthdsm
  committed
  f105c6f
- fix ngscheckmate/vafncm
  matthdsm
  committed
  14c98d6
- drop ca-certs
  matthdsm
  committed
  a22157d

Commits

Commits on Oct 27, 2026

Commits on Oct 28, 2026