Harmonise metadata columns across datasets#54
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- Add dataset_sex() helper to retrieve sex from coconat registration - Add sex column to cf_meta() and cf_partners() - Set sex in all dataset registrations (M for male datasets, F for female) - Add tests for sex column
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Summary
coconatfly.harmonise_classoption)tissuecolumn (brain/vnc/cns) based on datasetsexcolumn (M/F) from dataset registrationsidevalues to L/R/M/NAcf_meta()New package options
coconatfly.harmonise_class: If TRUE, harmonise class values to malecns style across all datasets (default: FALSE)Standard columns
The returned data frame now includes these standard columns:
id,key: neuron identifiers (key is unique across datasets)class,subclass,type: cell class hierarchy (optionally harmonised to malecns style)instance: summarises properties of individual neuronsside: normalised to L/R/M (left/right/midline) or NAsex: M or F, from dataset registrationtissue: brain, vnc, or cns depending on datasetgroup: numeric, defines related neurons within datasetdataset: source dataset nameRelated
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