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upgrades to bids validator v1.7.2 (from 1.2.5) #16

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upgrades to bids validator v1.7.2 (from 1.2.5) #16

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a1f6c16
upgrades to bids validator v1.7.2 (from 1.2.5)
akhanf Jun 1, 2021
52198b4
update nodejs from v8 to v16
akhanf Jun 1, 2021
97494dd
Update Dockerfile
akhanf Jun 1, 2021
0b5d877
install npm
akhanf Jun 1, 2021
88ccb30
follow recommended instructions for bids validator
akhanf Jun 1, 2021
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18 changes: 2 additions & 16 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -4,9 +4,6 @@ MAINTAINER <alik@robarts.ca>
#heudiconv version:
ENV HEUDICONVTAG v0.5.4

#bids validator version:
ENV BIDSTAG 1.2.5

#pydeface version:
ENV PYDEFACETAG v1.1.0

Expand Down Expand Up @@ -123,20 +120,9 @@ RUN mkdir -p /opt/tar2bids
COPY . /opt/tar2bids

## Install bids-validator



RUN apt-get update && \
apt-get install -y curl git && \
curl -sL https://deb.nodesource.com/setup_8.x | bash - && \
apt-get remove -y curl && \
apt-get install -y nodejs && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

RUN git clone https://github.com/bids-standard/bids-validator /opt/bids-validator && \
cd /opt/bids-validator && \
git checkout $BIDSTAG && \
npm install -g /opt/bids-validator/bids-validator
apt-get install -y git nodejs && apt-get install -y npm && \
npm install --global npm@^7 && npm install -g bids-validator

#install gnu parallel
RUN apt-get update && apt-get install -y parallel
Expand Down