Evidence Normalization

Service for normalizing evidence

Installation

Install from PyPI:

python3 -m pip install evidence-normalizer

To install ETL dependencies:

python3 -m pip install evidence-normalizer[etl]

Development

Clone the repo and create a virtual environment:

git clone https://github.com/cancervariants/evidence-normalization
cd evidence-normalization
python3 -m virtualenv venv
source venv/bin/activate

Install development dependencies and pre-commit:

python3 -m pip install -e '.[dev,etl,tests]'
pre-commit install

Backend Services

Evidence Normalization relies on Variation Normalization for normalizing Cancer Hotspots data. You will need to setup backend services and set the appropriate environment variables. See the README for more information.