Bump h11 from 0.14.0 to 0.16.0

biosim_server/api/main.py

@@ -8,7 +8,9 @@
 import dotenv
 import uvicorn
 from fastapi import FastAPI, File, UploadFile, Query, APIRouter, Depends, HTTPException
+from fastapi.openapi.docs import get_swagger_ui_html
 from starlette.middleware.cors import CORSMiddleware
+from starlette.responses import HTMLResponse
 
 from biosim_server.biosim_omex import OmexFile, get_cached_omex_file_from_upload
 from biosim_server.biosim_runs import BiosimulatorVersion
@@ -81,7 +83,7 @@ async def lifespan(_app: FastAPI) -> AsyncGenerator[None, None]:
     await shutdown_standalone()
 
 
-app = FastAPI(title=APP_TITLE, version=APP_VERSION, servers=APP_SERVERS, lifespan=lifespan)
+app = FastAPI(openapi_url="/docs", docs_url=None, redoc_url=None, title=APP_TITLE, version=APP_VERSION, servers=APP_SERVERS, lifespan=lifespan)
 
 # add origins
 app.add_middleware(
@@ -106,6 +108,16 @@ def root() -> dict[str, str]:
 def get_version() -> str:
     return APP_VERSION
 
+@app.get("/docs", include_in_schema=False)
+async def custom_swagger_ui_html() -> HTMLResponse:
+    if app.openapi_url is None:
+        raise HTTPException(status_code=404, detail="OpenAPI schema not available")
+    return get_swagger_ui_html(
+        openapi_url=app.openapi_url,
+        title=app.title + " - Swagger UI",
+        swagger_js_url="https://cdnjs.cloudflare.com/ajax/libs/swagger-ui/3.0.21/swagger-ui-bundle.js", # Replace with your CDN URL
+        swagger_css_url="https://cdnjs.cloudflare.com/ajax/libs/swagger-ui/3.0.21/swagger-ui.css",     # Replace with your CDN URL
+    )
 
 @app.post(
     "/verify/omex",

biosim_server/api/spec/openapi_3_1_0_generated.yaml

@@ -1,7 +1,7 @@
 openapi: 3.1.0
 info:
   title: biosim-server
-  version: 0.2.1
+  version: 0.2.3
 paths:
   /:
     get:

biosim_server/version.py

@@ -1 +1 @@
-__version__ = "0.2.2"
+__version__ = "0.2.3"

kustomize/overlays/biosim-gke/ingress.yaml

@@ -6,6 +6,7 @@ metadata:
     app: api-ingress
   annotations:
     cert-manager.io/cluster-issuer: "letsencrypt-prod"
+    nginx.ingress.kubernetes.io/proxy-body-size: 20m
 spec:
   ingressClassName: nginx
   tls:

kustomize/overlays/biosim-gke/kustomization.yaml

@@ -5,9 +5,9 @@ namespace: biosim-gke
 
 images:
 - name: ghcr.io/biosimulations/biosim-api
-  newTag: amd64_0.2.2
+  newTag: amd64_0.2.3
 - name: ghcr.io/biosimulations/biosim-worker
-  newTag: amd64_0.2.2
+  newTag: amd64_0.2.3
 - name: docker.io/library/mongo
   newTag: 8.0.4
 

kustomize/overlays/biosim-local/kustomization.yaml

@@ -5,9 +5,9 @@ namespace: biosim-local
 
 images:
 - name: ghcr.io/biosimulations/biosim-api
-  newTag: arm64_0.2.1
+  newTag: arm64_0.2.3
 - name: ghcr.io/biosimulations/biosim-worker
-  newTag: arm64_0.2.1
+  newTag: arm64_0.2.3
 - name: docker.io/library/mongo
   newTag: 8.0.4
 

kustomize/overlays/biosim-rke/ingress.yaml

@@ -6,6 +6,7 @@ metadata:
     app: api-ingress
   annotations:
     cert-manager.io/cluster-issuer: "letsencrypt-prod"
+    nginx.ingress.kubernetes.io/proxy-body-size: "20m"
 spec:
   ingressClassName: nginx
   tls:

kustomize/overlays/biosim-rke/kustomization.yaml

@@ -5,9 +5,9 @@ namespace: biosim-rke
 
 images:
 - name: ghcr.io/biosimulations/biosim-api
-  newTag: amd64_0.2.1
+  newTag: amd64_0.2.3
 - name: ghcr.io/biosimulations/biosim-worker
-  newTag: amd64_0.2.1
+  newTag: amd64_0.2.3
 - name: docker.io/library/mongo
   newTag: 8.0.4
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "biosim-server"
-version = "0.2.2"
+version = "0.2.3"
 description = "Server for the consolidated Biosimulations API"
 authors = ["Alex Patrie <alexanderpatrie@gmail.com>, Jim Schaff <schaff@uchc.edu>"]
 readme = "README.md"