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andrewbudge/README.md

Andrew Budge

  • Undergrad at Utah Valley University studying bioinformatics
  • studying phylogenomics and building tools to streamline genomics workflows.

Most of my projects are command-line tools — usually written in Rust — that take a slow or fiddly step in pipelines and make it fast, reproducible and easy to use.

About me

  • Research focus: phylogenomics, comparative genomics, and metagenomics
  • I like building lightweight, dependable CLI tools for researchers
  • Currently working on toolkits to make phylogenetic analysis less tedious
  • Reach me at andrewcbudge@gmail.com

Tech stack

Languages Rust · R · Bash

Workflows & pipelines Nextflow

Domains Phylogenomics · Metagenomics · Sequence analysis

Featured projects

Project Description
phorge A lightweight CLI toolkit for phylogenetic analysis.
SeqRipper Extract genes from mitochondrial genomes — a fast Rust CLI for phylogenomics.
Command-Line for Biologists A practical guide to the command line for biologists getting started with bioinformatics.

GitHub stats

Andrew's GitHub stats

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  1. phorge phorge Public

    A lightweight CLI toolkit for phylogenetic analysis

    Rust

  2. Command-Line-for-Biologists-Guide Command-Line-for-Biologists-Guide Public

    TeX

  3. phinder phinder Public

    A Nextflow pipeline for the detection, quality assessment, annotation, and classification of bacteriophages from metagenomically assembled contigs

    Nextflow

  4. Liger Liger Public

    A smart concatenation tool to create supermatrices

    Rust 1