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1. laminlabs/lamindb laminlabs/lamindb Public

   Open-source data lakehouse for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. Context and memory for millions of datasets & tra…

   Python 267 25

2. scverse/anndata scverse/anndata Public

   Annotated data.

   Python 748 196

3. scverse/scanpy scverse/scanpy Public

   Single-cell analysis in Python. Scales to >100M cells.

   Python 2.5k 749

4. theislab/scarches theislab/scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 405 70

5. theislab/intercode theislab/intercode Public

   Jupyter Notebook 6 1