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created meta/ directory and populated from EPMCConverter #29

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created meta/ directory and populated from EPMCConverter #29

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8 changes: 7 additions & 1 deletion src/main/java/org/xmlcml/norma/biblio/json/EPMCConverter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@

public class EPMCConverter implements CellCalculator {


private static final Logger LOG = Logger.getLogger(EPMCConverter.class);
static {
LOG.setLevel(Level.DEBUG);
Expand Down Expand Up @@ -114,10 +115,13 @@ public void readAndProcessEntry() throws IOException {

private void writeCurrentCTree(JsonElement entry) {
if (currentCTree != null && currentCTree.getDirectory() != null) {
File metaSourceDir = currentCTree.ensureMetaChildDirectory(CTree.SOURCE_DIR_NAME);
File entryFile = new File(currentCTree.getDirectory(), CProject.EUPMC_RESULTS_JSON);
entry = stripOneElementArrays(entry);
try {
DefaultArgProcessor.CM_LOG.debug("wrote: "+entryFile);
LOG.debug("wrote: "+entryFile);
File metaSourceMetadataFile = new File(metaSourceDir, CTree.METADATA_JSON);
FileUtils.writeStringToFile(metaSourceMetadataFile, entry.toString(), Charset.forName("UTF-8"));
FileUtils.writeStringToFile(entryFile, entry.toString(), Charset.forName("UTF-8"));
} catch (IOException e) {
throw new RuntimeException("Cannot write "+entryFile);
Expand Down Expand Up @@ -212,6 +216,7 @@ public void setDataTablesTool(DataTablesTool dataTablesTool) {
this.dataTablesTool = dataTablesTool;
}

@Deprecated // move tyo separate class
public DataTablesTool getOrCreateDataTablesTool() {
if (dataTablesTool == null) {
dataTablesTool = new DataTablesTool();
Expand All @@ -223,6 +228,7 @@ public HtmlHtml createHtml() {
getOrCreateDataTablesTool();
dataTablesTool.setTitle("METADATA");
dataTablesTool.setCellCalculator(this);
LOG.warn("change link");
this.setRemoteLink0("../../src/test/resources/org/xmlcml/ami2/zika/");
this.setRemoteLink1("/scholarly.html");
this.setRowHeadingName("EPMCID");
Expand Down