From d20dd9e5f9dc9b61674f513d8511006ba700c601 Mon Sep 17 00:00:00 2001 From: Valentina Date: Thu, 25 Jun 2026 14:52:58 +0200 Subject: [PATCH 1/9] fix&update: added tests on viewer + fix single entity viz and interal/external anchors in a hrefs --- lode/reader/config/owl.yaml | 5 +- lode/reader/loader.py | 4 + lode/templates/_entity_card.html | 26 +- lode/templates/viewer.html | 23 +- lode/viewer/base_viewer.py | 35 ++- lode/viewer/owl_viewer.py | 1 - pyproject.toml | 2 +- tests/test_owl_viewer.py | 429 +++++++++++++++++++++++++++++++ uv.lock | 2 +- 9 files changed, 511 insertions(+), 16 deletions(-) create mode 100644 tests/test_owl_viewer.py diff --git a/lode/reader/config/owl.yaml b/lode/reader/config/owl.yaml index 62fc2db..f2d67b7 100644 --- a/lode/reader/config/owl.yaml +++ b/lode/reader/config/owl.yaml @@ -587,7 +587,10 @@ mapper: # ========== REWRITE BASE ========== - # empty for now + rdfs:isDefinedBy: + is: predicate + target_classes: [Resource] + setters: [set_is_defined_by: Individual] # involves in punning # ====================== diff --git a/lode/reader/loader.py b/lode/reader/loader.py index 0d250fa..606c926 100644 --- a/lode/reader/loader.py +++ b/lode/reader/loader.py @@ -32,6 +32,10 @@ def load(self, source: str) -> None: if self._is_url(source): self._load_from_url_with_content_negotiation(source) + + # ADD BY VALE TO FIX WINDOWS LOCAL BUG - COMMENTED FOR PRODUCTION + # elif os.path.isfile(source): + # self._load_from_local_file(source) else: # A value carrying a URL scheme that is not http(s) (file:, ftp:, ...) # must not be silently treated as a local path. Bare local paths diff --git a/lode/templates/_entity_card.html b/lode/templates/_entity_card.html index cb24963..6d43000 100644 --- a/lode/templates/_entity_card.html +++ b/lode/templates/_entity_card.html @@ -24,10 +24,14 @@ {{ v.text }} {% elif v.link in anchor_map %} {{ v.text }} - {% else %} -
{{ v.text }}
+ {% elif is_static %} + {{ v.text }} + {% else %} + {{ v.text }} {% endif %} {% if v_type in type_map %} @@ -61,6 +65,8 @@

{% endif %}

+ + {% if not single_resource %} back to ToC @@ -69,6 +75,7 @@

{{type_map[item.type.lower()].singular}} ToC {% endif %} + {% endif %}
@@ -188,8 +195,12 @@
{{ part.text }} {% elif part.link in anchor_map %} {{ part.text }} - {% else %} + {% elif part.is_external %} {{ part.text }} + {% elif is_static %} + {{ part.text }} + {% else %} + {{ part.text }} {% endif %} {% if v_type in type_map %} @@ -227,11 +238,16 @@
{{ rel_item.text }} {% elif rel_item.link in anchor_map %} {{ rel_item.text }} - {% else %} + {% elif rel_item.is_external %} {{ rel_item.text }} + {% if is_md %}data-md="{{ rel_item.text | e }}"{% endif %}>{{ rel_item.text }} + {% elif is_static %} + {{ rel_item.text }} + {% else %} + {{ rel_item.text }} {% endif %} + {% if v_type in type_map %} {{ type_map[v_type].abb }} {% endif %} diff --git a/lode/templates/viewer.html b/lode/templates/viewer.html index 3561275..bbda8d4 100644 --- a/lode/templates/viewer.html +++ b/lode/templates/viewer.html @@ -61,6 +61,22 @@ {% endif %} {% if metadata %} + {% if single_resource %} +
+ +

+ {% if metadata.title %} + {% for title in metadata.title %}{{ title.text }}{% endfor %} + {% elif metadata.label %}{{ metadata.label[0].text }}{% endif %} +

+ ontology context — click to expand +
+

{{ metadata.uri[0].link }}

+ +
+
+
+ {% else %}

@@ -79,6 +95,7 @@

+ {% endif %}
{% for key, val_list in metadata.items() %} @@ -137,7 +154,7 @@

{% endif %}

-
+ {% if single_resource %}
{% else %}
{% endif %} {% endif %} {% if grouped_view and sections %} @@ -202,7 +219,7 @@

Namespace Declarations @@ -220,7 +237,7 @@

- ← Back to Index + ← Back to full documentation {% endif %} diff --git a/lode/viewer/base_viewer.py b/lode/viewer/base_viewer.py index ced4d50..e94f69f 100644 --- a/lode/viewer/base_viewer.py +++ b/lode/viewer/base_viewer.py @@ -14,6 +14,18 @@ class BaseViewer: def __init__(self, reader): self.reader = reader self._cache = reader._instance_cache # it uses + self._internal_iris = None + + def _is_internal(self, uri) -> bool: + if not uri: + return False + if self._internal_iris is None: + self._internal_iris = { + str(i.get_has_identifier()) + for i in self.get_toc_instances() # <-- NON get_all_instances() + if hasattr(i, 'get_has_identifier') and i.get_has_identifier() + } + return str(uri) in self._internal_iris def get_all_instances(self) -> List: """Ottiene tutte le istanze (esclusi literal).""" @@ -106,6 +118,16 @@ def get_view_data(self, resource_uri: Optional[str] = None, language: Optional[s 'entities': self._format_entities(all_instances, language) } + def _is_toc_entity(self, instance) -> bool: + """Browsable (own card + clickable link) iff its type is in get_toc_config. + Resources not listed in get_o_config are shown when mentioned as plain text + in cards (external-ref), just never linked.""" + toc_keys = {key for key, _id, _title in self.get_toc_config()} + return type(instance).__name__ in toc_keys + + def get_toc_instances(self) -> List: + return [i for i in self.get_all_instances() if self._is_toc_entity(i)] + def _handle_single_resource(self, resource_uri: str, language: Optional[str] = None) -> Dict: """ Standard logic for displaying a single resource. @@ -117,6 +139,9 @@ def _handle_single_resource(self, resource_uri: str, language: Optional[str] = N return {'error': f'Resource {resource_uri} not found'} instances = list(instance_set) if isinstance(instance_set, set) else [instance_set] + instances = [i for i in instances if self._is_toc_entity(i)] + if not instances: + return {'error': f'{resource_uri} is not a browsable entity'} return { 'single_resource': True, @@ -384,14 +409,15 @@ def _resolve_resource_value(self, obj, language=None) -> dict: 'lan': None, 'parts': None, # This key is for restrictions 'type': None, - 'is_deprecated': False + 'is_deprecated': False, + 'is_external': False, } if not obj: return handler_dic # --- 1. INTERCEPT RESTRICTIONS --- restriction_types = ["Restriction", "PropertyConceptRestriction", "Quantifier", "Cardinality", "TruthFunction", - "OneOf", "Value"] + "OneOf", "Value", "DatatypeRestriction"] obj_type = type(obj).__name__ if obj_type in restriction_types: @@ -406,6 +432,7 @@ def _resolve_resource_value(self, obj, language=None) -> dict: handler_dic['parts'] = parts handler_dic['text'] = "".join([p['text'] for p in parts if p.get('text')]) handler_dic['link'] = None # Forces Jinja to ignore the blank node URI + handler_dic['is_external'] = not self._is_internal(handler_dic['link']) handler_dic['type'] = obj_type return handler_dic @@ -483,7 +510,7 @@ def _resolve_resource_value(self, obj, language=None) -> dict: # --- 5. Normal Resource Handling (Concepts, Properties, Individuals) --- if hasattr(obj, 'get_has_identifier'): handler_dic['link'] = obj.get_has_identifier() - + handler_dic['is_external'] = not self._is_internal(handler_dic['link']) is_dep = getattr(obj, 'get_is_deprecated')() if hasattr(obj, 'get_is_deprecated') else getattr(obj, 'is_deprecated', False) @@ -687,7 +714,7 @@ def _get(instance, prop_name, default=None): resolved = self._resolve_resource_value(obj, language) if resolved.get('text'): - return [{'text': resolved['text'], 'link': resolved.get('link'), 'type': resolved.get('type')}] + return [{'text': resolved['text'], 'link': resolved.get('link'), 'type': resolved.get('type'), 'is_external': resolved.get('is_external', False)}] return [] diff --git a/lode/viewer/owl_viewer.py b/lode/viewer/owl_viewer.py index 2cff6fc..0fabdae 100644 --- a/lode/viewer/owl_viewer.py +++ b/lode/viewer/owl_viewer.py @@ -11,7 +11,6 @@ class OwlViewer(BaseViewer): 'attribute': {'singular': 'Data Property', 'plural': 'Data Properties', 'abb': 'dp'}, 'annotation': {'singular': 'Annotation Property', 'plural': 'Annotation Properties', 'abb': 'ap'}, 'individual': {'singular': 'Named Individual', 'plural': 'Named Individuals', 'abb': 'ni'}, - 'model': {'singular': 'Ontology', 'plural': 'Ontologies', 'abb': 'o'}, } def get_toc_config(self): diff --git a/pyproject.toml b/pyproject.toml index 7970848..7dbcb3d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "lode" -version = "0.3.0" +version = "0.3.1" description = "New reengineered version of LODE, maintained by OpenCitations" authors = [{name = "Valentina Pasqual, Silvio Peroni", email = "valentina.pasqual2@unibo.it"}] readme = "README.md" diff --git a/tests/test_owl_viewer.py b/tests/test_owl_viewer.py new file mode 100644 index 0000000..7cec7c4 --- /dev/null +++ b/tests/test_owl_viewer.py @@ -0,0 +1,429 @@ +""" +test_owl_viewer.py +Tests for OwlViewer / BaseViewer. + +Two layers: + - Unit: a fake reader with a hand-built _instance_cache, so we exercise + the viewer in isolation (no RDF parsing, no network). These pin + the ToC-filtering / internal-vs-external / single-resource + contract precisely. + - Integration: parametrized over the ontologies.json corpus (same pattern as + test_owl_integrity), asserting viewer invariants on real data. + Skips an ontology if it cannot be loaded. + +Run with: + pytest test_owl_viewer.py -v +""" + +import json +import os +from pathlib import Path + +import pytest + +from lode.models import ( + Concept, Relation, Attribute, Annotation, Individual, + Model, Statement, Literal, +) +from lode.viewer import OwlViewer +import re + + +# --------------------------------------------------------------------------- +# Unit-test scaffolding: a minimal fake reader the viewer can consume. +# --------------------------------------------------------------------------- + +class _FakeReader: + """Mimics the parts of Reader that BaseViewer touches: an instance cache, + a provenance subgraph hook, and a graph for namespace binding.""" + + def __init__(self, cache): + self._instance_cache = cache + self._graph = _FakeGraph() + + def get_provenance_subgraph(self, instance): + return _FakeGraph() + + +class _FakeGraph: + def namespaces(self): + return iter(()) + + def serialize(self, format="turtle"): + return "" + + def __iter__(self): + return iter(()) + + +def _entity(cls, uri, label=None): + inst = cls() + inst.set_has_identifier(str(uri)) + if label is not None: + lit = Literal() + lit.set_has_value(label) + lit.set_has_language("en") + inst.set_has_label(lit) + return inst + + +def _viewer(*instances): + """Cache keyed by URI -> set of instances (handles punning: same key, + multiple instances).""" + cache = {} + for inst in instances: + key = inst.get_has_identifier() + cache.setdefault(key, set()).add(inst) + return OwlViewer(_FakeReader(cache)) + +# rdflib BNode ids look like 'N' + 32 hex chars, or 'n' for parsed +# blank nodes. Anything matching means a raw blank node leaked into the view. +_BNODE_RE = re.compile(r'^(_:)?[Nn][0-9a-fA-F]{8,}$') + +def _looks_like_bnode(value) -> bool: + if not value: + return False + return bool(_BNODE_RE.match(str(value).strip())) + +def _iter_resolved_values(data): + """Yield every resolved value dict in an entity view (relations + statements), + flattening restriction parts.""" + for section in data.get("sections", []): + for ent in section["entities"]: + buckets = list(ent.get("relations", {}).values()) + list(ent.get("statements", {}).values()) + for values in buckets: + for v in (values if isinstance(values, list) else [values]): + for part in (v.get("parts") or [v]): + yield ent["uri"], part + + +C = "http://ex.org/MyClass" +P = "http://ex.org/myProp" +I = "http://ex.org/myIndividual" +ONTO = "http://ex.org/ontology" +EXT = "http://purl.org/spar/fabio/ProceedingsPaper" # not in our cache + + +# --------------------------------------------------------------------------- +# _is_toc_entity — the single source of truth for "is this browsable?" +# --------------------------------------------------------------------------- + +class TestIsTocEntity: + + def test_concept_is_toc(self): + v = _viewer() + assert v._is_toc_entity(_entity(Concept, C)) is True + + def test_relation_is_toc(self): + v = _viewer() + assert v._is_toc_entity(_entity(Relation, P)) is True + + def test_model_is_not_toc(self): + """An ontology (Model) is never a ToC entity: Model is not in get_toc_config().""" + v = _viewer() + assert v._is_toc_entity(_entity(Model, ONTO)) is False + + def test_statement_is_not_toc(self): + v = _viewer() + assert v._is_toc_entity(_entity(Statement, "http://ex.org/stmt")) is False + + def test_config_drives_membership(self): + """The decision is purely config-driven: every key in get_toc_config() + is accepted, nothing else is.""" + v = _viewer() + toc_keys = {key for key, _id, _title in v.get_toc_config()} + assert "Concept" in toc_keys + assert "Model" not in toc_keys + + +# --------------------------------------------------------------------------- +# get_toc_instances — only ToC entities surface +# --------------------------------------------------------------------------- + +class TestGetTocInstances: + + def test_excludes_model(self): + v = _viewer(_entity(Concept, C), _entity(Model, ONTO)) + types = {type(i).__name__ for i in v.get_toc_instances()} + assert "Concept" in types + assert "Model" not in types + + def test_keeps_all_toc_kinds(self): + v = _viewer( + _entity(Concept, C), + _entity(Relation, P), + _entity(Attribute, "http://ex.org/attr"), + _entity(Annotation, "http://ex.org/anno"), + _entity(Individual, I), + ) + types = {type(i).__name__ for i in v.get_toc_instances()} + assert types == {"Concept", "Relation", "Attribute", "Annotation", "Individual"} + + def test_punned_individual_still_surfaces(self): + """If an IRI is punned Model+Individual, the Individual is a legitimate + ToC entity (config-driven); only the Model facet is dropped.""" + onto = _entity(Model, ONTO) + indiv = _entity(Individual, ONTO) + v = _viewer(onto, indiv) + instances = v.get_toc_instances() + assert any(type(i).__name__ == "Individual" for i in instances) + assert not any(type(i).__name__ == "Model" for i in instances) + + +# --------------------------------------------------------------------------- +# _is_internal — internal == present among ToC entities +# --------------------------------------------------------------------------- + +class TestIsInternal: + + def test_known_concept_is_internal(self): + v = _viewer(_entity(Concept, C)) + assert v._is_internal(C) is True + + def test_external_uri_is_not_internal(self): + v = _viewer(_entity(Concept, C)) + assert v._is_internal(EXT) is False + + def test_punned_ontology_iri_is_internal_as_individual(self): + v = _viewer(_entity(Concept, C), _entity(Model, ONTO), _entity(Individual, ONTO)) + assert v._is_internal(ONTO) is True + + def test_none_is_not_internal(self): + v = _viewer(_entity(Concept, C)) + assert v._is_internal(None) is False + + +# --------------------------------------------------------------------------- +# _resolve_resource_value — is_external flag is set correctly +# --------------------------------------------------------------------------- + +class TestResolveResourceValue: + + def test_internal_resource_not_external(self): + v = _viewer(_entity(Concept, C, "My Class")) + target = _entity(Concept, C, "My Class") + d = v._resolve_resource_value(target) + assert d["link"] == C + assert d["is_external"] is False + + def test_external_resource_is_external(self): + v = _viewer(_entity(Concept, C)) + target = _entity(Concept, EXT, "Proceedings Paper") + d = v._resolve_resource_value(target) + assert d["link"] == EXT + assert d["is_external"] is True + + def test_punned_ontology_individual_is_internal(self): + v = _viewer(_entity(Concept, C), _entity(Model, ONTO), _entity(Individual, ONTO)) + target = _entity(Individual, ONTO, "fabio") + d = v._resolve_resource_value(target) + assert d["is_external"] is False + + +# --------------------------------------------------------------------------- +# _handle_single_resource — non-ToC URIs are not browsable +# --------------------------------------------------------------------------- + +class TestHandleSingleResource: + + def test_browsable_concept_returns_entities(self): + v = _viewer(_entity(Concept, C, "My Class")) + data = v._handle_single_resource(C) + assert data.get("single_resource") is True + assert len(data["entities"]) == 1 + assert data["entities"][0]["uri"] == C + + def test_ontology_iri_is_not_browsable(self): + """Opening ?resource= must NOT dump the whole model.""" + v = _viewer(_entity(Model, ONTO)) + data = v._handle_single_resource(ONTO) + assert "error" in data + assert "entities" not in data + + def test_punned_ontology_drops_model_keeps_individual(self): + v = _viewer(_entity(Model, ONTO), _entity(Individual, ONTO, "thing")) + data = v._handle_single_resource(ONTO) + assert data.get("single_resource") is True + types = {e["type"] for e in data["entities"]} + assert "Model" not in types + assert "Individual" in types + + def test_unknown_uri_returns_error(self): + v = _viewer(_entity(Concept, C)) + data = v._handle_single_resource("http://ex.org/nope") + assert "error" in data + + +# --------------------------------------------------------------------------- +# Grouped view — sections come only from ToC config, Model excluded +# --------------------------------------------------------------------------- + +class TestGroupedView: + + def test_model_absent_from_sections(self): + v = _viewer( + _entity(Concept, C, "Class"), + _entity(Individual, I, "Indiv"), + _entity(Model, ONTO), + ) + data = v.get_view_data() # no resource_uri -> grouped + section_titles = {s["title"] for s in data["sections"]} + assert "Concept" in section_titles + # Model has no section because it is not in get_toc_config() + assert all("Ontolog" not in t for t in section_titles) + + def test_each_section_entity_is_toc_kind(self): + v = _viewer( + _entity(Concept, C, "Class"), + _entity(Relation, P, "prop"), + _entity(Model, ONTO), + ) + data = v.get_view_data() + toc_keys = {key for key, _id, _title in v.get_toc_config()} + for section in data["sections"]: + for ent in section["entities"]: + assert ent["type"] in toc_keys + + +# =========================================================================== +# Integration: real corpus, same loader pattern as test_owl_integrity. +# =========================================================================== + +ONTOLOGIES_PATH = Path(__file__).parent / "ontologies_spar.json" + + +def _load_uris(): + single = os.environ.get("TEST_ONTOLOGY_URI") + if single: + return [single] + if not ONTOLOGIES_PATH.exists(): + return [] + with open(ONTOLOGIES_PATH) as f: + data = json.load(f) + return [entry["uri"] for entry in data["uris"]] + + +@pytest.fixture(scope="module", params=_load_uris()) +def viewer(request): + from lode.reader import Reader + reader = Reader() + try: + reader.load_instances(request.param, "owl") + except Exception as e: + pytest.skip(f"Could not load {request.param}: {e}") + v = reader.get_viewer() + yield v + reader.clear_cache() + + +class TestCorpusInvariants: + + def test_no_model_in_toc_instances(self, viewer): + """No ToC entity is a Model, on any real ontology.""" + assert all(type(i).__name__ != "Model" for i in viewer.get_toc_instances()) + + def test_grouped_sections_only_toc_kinds(self, viewer): + data = viewer.get_view_data() + toc_keys = {key for key, _id, _title in viewer.get_toc_config()} + for section in data.get("sections", []): + for ent in section["entities"]: + assert ent["type"] in toc_keys + + def test_single_resource_roundtrip(self, viewer): + """Opening any ToC entity by URI returns exactly that entity, browsable.""" + toc = viewer.get_toc_instances() + if not toc: + pytest.skip("no ToC entities in this ontology") + target = toc[0] + uri = str(target.get_has_identifier()) + data = viewer.get_view_data(resource_uri=uri) + assert "error" not in data + assert any(e["uri"] == uri for e in data["entities"]) + + def test_opening_ontology_iri_shows_no_model_facet(self, viewer): + """Opening the ontology IRI never surfaces the Model facet (only its + ToC facets, if any).""" + from rdflib.namespace import RDF, OWL + from rdflib import URIRef + for onto in viewer.reader._graph.subjects(RDF.type, OWL.Ontology): + if not isinstance(onto, URIRef): + continue + data = viewer.get_view_data(resource_uri=str(onto)) + if "error" not in data: + assert all(e["type"] != "Model" for e in data["entities"]) + break + + def test_no_raw_bnode_in_entity_links(self, viewer): + """No resolved relation/statement value points to a raw BNode id: + unprocessed blank nodes must never become clickable links.""" + data = viewer.get_view_data() + offenders = [] + for section in data.get("sections", []): + for ent in section["entities"]: + for rel_name, values in ent["relations"].items(): + for v in (values if isinstance(values, list) else [values]): + # restriction parts carry their own sub-links + for part in (v.get("parts") or [v]): + if _looks_like_bnode(part.get("link")): + offenders.append((ent["uri"], rel_name, part.get("link"))) + assert not offenders, f"raw BNode ids leaked as links: {offenders[:10]}" + + def test_no_raw_bnode_as_entity_uri(self, viewer): + """No ToC entity is itself a raw BNode (every card must have a real IRI).""" + bad = [ + str(i.get_has_identifier()) + for i in viewer.get_toc_instances() + if _looks_like_bnode(i.get_has_identifier()) + ] + assert not bad, f"ToC entities with BNode identifier: {bad[:10]}" + + def test_no_raw_bnode_in_displayed_text(self, viewer): + """No resolved value shows a raw BNode id as its visible text. + Restrictions are allowed (their text is composed), so we check leaf + values only — a leaf whose text equals a BNode id is a leak.""" + data = viewer.get_view_data() + offenders = [] + for section in data.get("sections", []): + for ent in section["entities"]: + for rel_name, values in ent["relations"].items(): + for v in (values if isinstance(values, list) else [values]): + if v.get("parts"): + continue # composed restriction text is fine + if _looks_like_bnode(v.get("text")): + offenders.append((ent["uri"], rel_name, v.get("text"))) + assert not offenders, f"raw BNode ids leaked as text: {offenders[:10]}" + + def test_external_links_are_not_clickable(self, viewer): + """Any value whose link is NOT a ToC entity (external URL, uncached + import, raw bnode) must be is_external=True, so the template renders it + as plain text — never as an /extract?resource= link. Regression for the + nlm.nih.gov 'see also' that wrongly reloaded the API.""" + data = viewer.get_view_data() + offenders = [] + for ent_uri, val in _iter_resolved_values(data): + link = val.get("link") + if not link: + continue + # ground truth: is this link a real ToC entity? + is_toc = viewer._is_internal(link) + if not is_toc and not val.get("is_external", False): + offenders.append((ent_uri, link)) + assert not offenders, ( + f"external/non-ToC links not marked is_external " + f"(would become clickable /extract links): {offenders[:10]}" + ) + + def test_toc_links_stay_internal(self, viewer): + """Mirror invariant: a link that IS a ToC entity must be is_external=False + (so internal navigation still works).""" + data = viewer.get_view_data() + offenders = [] + for ent_uri, val in _iter_resolved_values(data): + link = val.get("link") + if not link: + continue + if viewer._is_internal(link) and val.get("is_external", True): + offenders.append((ent_uri, link)) + assert not offenders, ( + f"ToC links wrongly marked external (lose internal navigation): {offenders[:10]}" + ) \ No newline at end of file diff --git a/uv.lock b/uv.lock index e7b3580..01cc53d 100644 --- a/uv.lock +++ b/uv.lock @@ -418,7 +418,7 @@ wheels = [ [[package]] name = "lode" -version = "0.3.0" +version = "0.3.1" source = { editable = "." } dependencies = [ { name = "fastapi" }, From c3d4fcb0223b54cc72e2d98e247a880d0b5b6116 Mon Sep 17 00:00:00 2001 From: Valentina Date: Wed, 8 Jul 2026 18:23:54 +0200 Subject: [PATCH 2/9] fix: general fixes in tests, presentation and static builder --- docs/.gitignore | 21 - docs/astro.config.mjs | 33 - docs/package-lock.json | 6488 ---------------------- docs/package.json | 18 - docs/public/favicon.svg | 1 - docs/src/content.config.ts | 7 - docs/src/content/docs/getting_started.md | 55 - docs/src/content/docs/index.mdx | 42 - docs/tsconfig.json | 5 - lode/api.py | 31 +- lode/builder.py | 132 +- lode/cli.py | 2 +- lode/reader/config/owl.yaml | 8 +- lode/reader/loader.py | 4 +- lode/static/style.css | 183 +- lode/templates/_entity_card.html | 295 +- lode/templates/_toc_sidebar.html | 6 +- lode/templates/viewer.html | 210 +- lode/viewer/base_viewer.py | 51 +- pyproject.toml | 3 +- tests/test_api.py | 30 +- tests/test_static_builder.py | 140 + uv.lock | 45 + 23 files changed, 807 insertions(+), 7003 deletions(-) delete mode 100644 docs/.gitignore delete mode 100644 docs/astro.config.mjs delete mode 100644 docs/package-lock.json delete mode 100644 docs/package.json delete mode 100644 docs/public/favicon.svg delete mode 100644 docs/src/content.config.ts delete mode 100644 docs/src/content/docs/getting_started.md delete mode 100644 docs/src/content/docs/index.mdx delete mode 100644 docs/tsconfig.json create mode 100644 tests/test_static_builder.py diff --git a/docs/.gitignore b/docs/.gitignore deleted file mode 100644 index 6240da8..0000000 --- a/docs/.gitignore +++ /dev/null @@ -1,21 +0,0 @@ -# build output -dist/ -# generated types -.astro/ - -# dependencies -node_modules/ - -# logs -npm-debug.log* -yarn-debug.log* -yarn-error.log* -pnpm-debug.log* - - -# environment variables -.env -.env.production - -# macOS-specific files -.DS_Store diff --git a/docs/astro.config.mjs b/docs/astro.config.mjs deleted file mode 100644 index d2e8ac6..0000000 --- a/docs/astro.config.mjs +++ /dev/null @@ -1,33 +0,0 @@ -import { defineConfig } from 'astro/config'; -import starlight from '@astrojs/starlight'; -import rehypeExternalLinks from 'rehype-external-links'; - -export default defineConfig({ - markdown: { - rehypePlugins: [ - [rehypeExternalLinks, { target: '_blank', rel: ['noopener', 'noreferrer'] }] - ], - }, - site: 'https://opencitations.github.io', - base: '/lode', - - integrations: [ - starlight({ - title: 'Lode', - description: 'New reengineered version of LODE, maintained by OpenCitations', - - social: [ - { icon: 'github', label: 'GitHub', href: 'https://github.com/opencitations/lode' }, - ], - - sidebar: [ - { - label: 'Guides', - items: [ - { label: 'Getting started', slug: 'getting_started' }, - ], - }, - ], - }), - ], -}); diff --git a/docs/package-lock.json b/docs/package-lock.json deleted file mode 100644 index b2ca34c..0000000 --- a/docs/package-lock.json +++ /dev/null @@ -1,6488 +0,0 @@ -{ - "name": "docs", - "version": "0.0.1", - "lockfileVersion": 3, - "requires": true, - "packages": { - "": { - "name": "docs", - "version": "0.0.1", - "dependencies": { - "@astrojs/starlight": "^0.37.1", - "astro": "^5.6.1", - "rehype-external-links": "^3.0.0", - "sharp": "^0.34.2" - } - }, - "node_modules/@astrojs/compiler": { - "version": "2.13.0", - "resolved": "https://registry.npmjs.org/@astrojs/compiler/-/compiler-2.13.0.tgz", - "integrity": "sha512-mqVORhUJViA28fwHYaWmsXSzLO9osbdZ5ImUfxBarqsYdMlPbqAqGJCxsNzvppp1BEzc1mJNjOVvQqeDN8Vspw==", - "license": "MIT" - }, - "node_modules/@astrojs/internal-helpers": { - "version": "0.7.5", - "resolved": "https://registry.npmjs.org/@astrojs/internal-helpers/-/internal-helpers-0.7.5.tgz", - 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"license": "MIT", - "funding": { - "type": "github", - "url": "https://github.com/sponsors/wooorm" - } - } - } -} diff --git a/docs/package.json b/docs/package.json deleted file mode 100644 index 8a6f276..0000000 --- a/docs/package.json +++ /dev/null @@ -1,18 +0,0 @@ -{ - "name": "docs", - "type": "module", - "version": "0.0.1", - "scripts": { - "dev": "astro dev", - "start": "astro dev", - "build": "astro build", - "preview": "astro preview", - "astro": "astro" - }, - "dependencies": { - "@astrojs/starlight": "^0.37.1", - "astro": "^5.6.1", - "rehype-external-links": "^3.0.0", - "sharp": "^0.34.2" - } -} diff --git a/docs/public/favicon.svg b/docs/public/favicon.svg deleted file mode 100644 index cba5ac1..0000000 --- a/docs/public/favicon.svg +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file diff --git a/docs/src/content.config.ts b/docs/src/content.config.ts deleted file mode 100644 index d9ee8c9..0000000 --- a/docs/src/content.config.ts +++ /dev/null @@ -1,7 +0,0 @@ -import { defineCollection } from 'astro:content'; -import { docsLoader } from '@astrojs/starlight/loaders'; -import { docsSchema } from '@astrojs/starlight/schema'; - -export const collections = { - docs: defineCollection({ loader: docsLoader(), schema: docsSchema() }), -}; diff --git a/docs/src/content/docs/getting_started.md b/docs/src/content/docs/getting_started.md deleted file mode 100644 index 4074cea..0000000 --- a/docs/src/content/docs/getting_started.md +++ /dev/null @@ -1,55 +0,0 @@ ---- -title: Getting started -description: How to use the Python package template ---- - -## Prerequisites - -- **UV**: Install from https://docs.astral.sh/uv/getting-started/installation/ -- **Python 3.10+**: UV can install Python for you with `uv python install` -- **Node.js and npm** (for documentation): Install from https://nodejs.org/en/download - -## Using the template - -1. Click the **Use this template** button on GitHub -2. Select **Create a new repository** -3. Clone your new repository -4. Run the setup script: - -```bash -python setup.py -``` - -The script will ask for: -- Package name -- Description -- Author name and email -- GitHub username/organization -- Whether to include documentation - -## After setup - -Configure your GitHub repository: - -1. **Add PyPI token** (for publishing releases) - - Create a token at https://pypi.org/manage/account/token/ - - Go to Settings > Secrets and variables > Actions - - Add a new secret named `PYPI_TOKEN` - -2. **Enable GitHub Pages** (if you included documentation) - - Go to Settings > Pages - - Set Source to "GitHub Actions" - -## Development - -```bash -# Install dependencies -uv sync --all-extras --dev - -# Run tests -uv run pytest tests/ - -# Build documentation locally -cd docs -npm run dev -``` diff --git a/docs/src/content/docs/index.mdx b/docs/src/content/docs/index.mdx deleted file mode 100644 index 6395634..0000000 --- a/docs/src/content/docs/index.mdx +++ /dev/null @@ -1,42 +0,0 @@ ---- -title: Lode -description: New reengineered version of LODE, maintained by OpenCitations -template: splash -hero: - title: Lode - tagline: New reengineered version of LODE, maintained by OpenCitations - actions: - - text: Get started - link: /lode/getting_started/ - variant: primary - - text: View on GitHub - link: https://github.com/opencitations/lode - icon: external ---- - -import { Card, CardGrid } from '@astrojs/starlight/components'; - -## Features - - - - Fast, modern Python package management with UV. - - - Pre-configured testing with pytest and coverage reports. - - - Beautiful documentation site with Astro Starlight. - - - Semantic versioning with automated releases to PyPI. - - - -## Quick start - -```bash -# Use this template on GitHub -# Then clone your new repository and run: -python setup.py -``` diff --git a/docs/tsconfig.json b/docs/tsconfig.json deleted file mode 100644 index 8bf91d3..0000000 --- a/docs/tsconfig.json +++ /dev/null @@ -1,5 +0,0 @@ -{ - "extends": "astro/tsconfigs/strict", - "include": [".astro/types.d.ts", "**/*"], - "exclude": ["dist"] -} diff --git a/lode/api.py b/lode/api.py index 431b7ee..562f5d3 100644 --- a/lode/api.py +++ b/lode/api.py @@ -14,6 +14,9 @@ from functools import lru_cache from uuid import uuid4 import hashlib +import minify_html +from starlette.middleware.gzip import GZipMiddleware +import re # Configura logging logging.basicConfig( @@ -32,12 +35,18 @@ app = FastAPI(title="LODE 2.0 API", version="1.0.0") +# Compress HTML response on wire +app.add_middleware(GZipMiddleware, minimum_size=1000) # Fix Blocked loading mixed active content on style.css app.add_middleware(ProxyHeadersMiddleware, trusted_hosts="*") templates = Jinja2Templates(directory="lode/templates") app.mount("/static", StaticFiles(directory="lode/static"), name="static") +# beautify produced HTML +templates.env.trim_blocks = True +templates.env.lstrip_blocks = True + # Available semantic artefacts types for API in versin 0.1.X ENABLED_FORMATS = {"owl"} @@ -107,6 +116,23 @@ def _prune_spool(): except OSError: pass +def _minify(html: str) -> str: + # 1. estrai e metti da parte i blocchi render-markdown (newline-sensitive) + stash = [] + def _hold(m): + stash.append(m.group(0)) + return f"\x00MD{len(stash)-1}\x00" + protected = re.sub( + r'<(span|div|a|p)\b[^>]*\brender-markdown\b[^>]*>.*?', + _hold, html, flags=re.S, + ) + # 2. minifica la struttura + out = minify_html.minify(protected, minify_css=False, minify_js=False) + # 3. reinserisci i blocchi intatti + for i, block in enumerate(stash): + out = out.replace(f"\x00MD{i}\x00", block) + return out + # ---------------------------------------------------------- # HELPERS FOR \extract endpoints using cache from the reader # ---------------------------------------------------------- @@ -120,13 +146,16 @@ def _render_view(request, reader, *, resource, lang, source_url, upload_id, read viewer = reader.get_viewer() data = viewer.get_view_data(resource_uri=resource, language=lang) data["warnings"] = reader.get_warnings() - return templates.TemplateResponse("viewer.html", { + resp = templates.TemplateResponse("viewer.html", { "request": request, "source_url": source_url, "upload_id": upload_id, "nav_qs": _nav_qs(read_as, source_url, upload_id, lang), **data, }) + resp.body = _minify(resp.body.decode("utf-8")).encode("utf-8") + resp.headers["content-length"] = str(len(resp.body)) + return resp def _url_token(url, read_as, imported, closure) -> str: key = f"{url}|{read_as}|{imported}|{closure}".encode() diff --git a/lode/builder.py b/lode/builder.py index 40abc72..cdbc282 100644 --- a/lode/builder.py +++ b/lode/builder.py @@ -4,7 +4,10 @@ from urllib.parse import quote from jinja2 import Environment, FileSystemLoader, select_autoescape import importlib.resources - +from lode.api import _minify +from lode.models.model import Model +from rdflib import URIRef +from rdflib.namespace import split_uri def _get_template_env(static_path: str = "static") -> Environment: try: @@ -26,19 +29,16 @@ def url_for(name: str, path: str = "") -> str: env.globals["url_for"] = url_for return env +def _prefix_map(graph): + return {str(ns): (p or 'default') for p, ns in graph.namespaces()} -def _uri_to_slug(uri: str) -> str: - for prefix in ('https://', 'http://'): - if uri.startswith(prefix): - uri = uri[len(prefix):] - break - return uri.replace('/', '_').replace('#', '_') +def _rel_slug(uri, graph): + prefix, ns, local = graph.namespace_manager.compute_qname(URIRef(str(uri)), generate=True) + return f"{prefix or 'default'}/{local}" -def _resource_url(uri: str, section: str) -> str: - """Genera path relativo alla pagina di una risorsa.""" - slug = _uri_to_slug(uri) - return f"resources/{section}/{slug}.html" +def _local_name(uri: str) -> str: + return uri.split('#', 1)[1] if '#' in uri else uri.rstrip('/').rsplit('/', 1)[-1] def _copy_static(out_dir: Path) -> None: static_src = Path(__file__).parent / "static" @@ -46,66 +46,114 @@ def _copy_static(out_dir: Path) -> None: if static_src.exists() and not static_dst.exists(): shutil.copytree(static_src, static_dst) - -def build_html(viewer, out_dir: Path, lang: str = "en") -> None: +def build_html(viewer, out_dir: Path, lang: str = "en", reader=None) -> None: from collections import defaultdict out_dir.mkdir(parents=True, exist_ok=True) _copy_static(out_dir) + + ontology_ns = viewer._get_ontology_ns() + graph = reader._graph if reader else viewer.reader._graph + + grouped = defaultdict(list) + for inst in viewer.get_all_instances(): + grouped[type(inst).__name__].append(inst) + + toc_config = viewer.get_toc_config() if hasattr(viewer, "get_toc_config") else [] + + # URI that will actually get a file (same criterion as the loop below) + materialized = set() + for class_key, _sid, _t in toc_config: + for inst in grouped.get(class_key, []): + u = inst.get_has_identifier() + if not u: + continue + if not (u.startswith(ontology_ns) or viewer._has_local_triples(u)): + continue + if _rel_slug(u, graph).rsplit("/", 1)[-1] == "": # namespace IRI, no local + continue + materialized.add(str(u)) + + def _keep(uri): + return str(uri) in materialized + + def resource_url_resource(uri, section=None): + if not _keep(uri): + return uri + rel = _rel_slug(uri, graph) + if rel.rsplit("/", 1)[-1] == "": # namespace IRI + return "../../index.html" + return f"../{rel}.html" + + def resource_url_index(uri, section=None): + if not _keep(uri): + return uri + rel = _rel_slug(uri, graph) + if rel.rsplit("/", 1)[-1] == "": + return "index.html" + return f"resources/{rel}.html" env_index = _get_template_env(static_path="static") env_resource = _get_template_env(static_path="../../static") + + if reader is not None: + for fmt, ext in [("turtle", "ttl"), ("xml", "rdf"), ("n3", "n3")]: + out = reader._graph.serialize(format=fmt) + if isinstance(out, bytes): + out = out.decode("utf-8") + (out_dir / f"ontology.{ext}").write_text(out, encoding="utf-8") template_index = env_index.get_template("viewer.html") template_resource = env_resource.get_template("viewer.html") toc_config = viewer.get_toc_config() if hasattr(viewer, "get_toc_config") else [] - def resource_url_index(uri: str, section: str) -> str: - return f"resources/{section}/{_uri_to_slug(uri)}.html" - - def resource_url_resource(uri: str, section: str) -> str: - return f"../../resources/{section}/{_uri_to_slug(uri)}.html" - # --- index.html --- data = viewer.get_view_data(language=lang) data["request"] = _FakeRequest("/") data["is_static"] = True data["resource_url"] = resource_url_index - html = template_index.render(**data) - (out_dir / "index.html").write_text(html, encoding="utf-8") - print(f" [build] index.html") + data["export_base"] = "ontology" + (out_dir / "index.html").write_text(_minify(template_index.render(**data)), encoding="utf-8") + print(" [build] index.html") if not toc_config: return - # Raggruppa istanze per nome classe Python - grouped = defaultdict(list) - for inst in viewer.get_all_instances(): - grouped[type(inst).__name__].append(inst) + res_dir = out_dir / "resources" + res_dir.mkdir(parents=True, exist_ok=True) - for class_key, section_id, section_title in toc_config: - instances = grouped.get(class_key, []) - if not instances: - continue - - section_dir = out_dir / "resources" / section_id - section_dir.mkdir(parents=True, exist_ok=True) - - for inst in instances: + _SER = [("turtle", "ttl"), ("xml", "rdf"), ("n3", "n3")] + count = 0 + for class_key, section_id, _ in toc_config: + for inst in grouped.get(class_key, []): uri = inst.get_has_identifier() if not uri: continue + native = uri.startswith(ontology_ns) + if not (native or viewer._has_local_triples(uri)): + continue + + rel = _rel_slug(uri, graph) + if rel.rsplit("/", 1)[-1] == "": # namespace IRI, no local part + continue + + page = res_dir / f"{rel}.html" + page.parent.mkdir(parents=True, exist_ok=True) + + for fmt, ext in _SER: + out = viewer.export_resource(uri, fmt) + if isinstance(out, bytes): + out = out.decode("utf-8") + (res_dir / f"{rel}.{ext}").write_text(out, encoding="utf-8") - slug = _uri_to_slug(uri) data_r = viewer.get_view_data(resource_uri=uri, language=lang) - data_r["request"] = _FakeRequest(f"resources/{section_id}/{slug}.html") + data_r["request"] = _FakeRequest(f"resources/{rel}.html") data_r["is_static"] = True data_r["resource_url"] = resource_url_resource - html_r = template_resource.render(**data_r) - (section_dir / f"{slug}.html").write_text(html_r, encoding="utf-8") - - print(f" [build] resources/{section_id}/ ({len(instances)} files)") + data_r["export_base"] = _local_name(uri) + page.write_text(_minify(template_resource.render(**data_r)), encoding="utf-8") + count += 1 class _FakeRequest: def __init__(self, path: str): @@ -114,7 +162,6 @@ def __init__(self, path: str): self.query_params = _FakeQueryParams() self.is_static = True - class _FakeQueryParams: def get(self, key: str, default: str = "") -> str: return default @@ -123,7 +170,6 @@ def get(self, key: str, default: str = "") -> str: def __getattr__(self, key: str) -> str: return "" - class _FakeURL: def __init__(self, path: str): self.path = path diff --git a/lode/cli.py b/lode/cli.py index 2c5e7e9..2d6e284 100644 --- a/lode/cli.py +++ b/lode/cli.py @@ -36,7 +36,7 @@ def cmd_build(args): ) viewer = reader.get_viewer() - build_html(viewer, out_dir, lang=args.lang) + build_html(viewer, out_dir, lang=args.lang, reader=reader) print(f"Done -> {out_dir}") diff --git a/lode/reader/config/owl.yaml b/lode/reader/config/owl.yaml index f2d67b7..9fdbb1c 100644 --- a/lode/reader/config/owl.yaml +++ b/lode/reader/config/owl.yaml @@ -587,10 +587,10 @@ mapper: # ========== REWRITE BASE ========== - rdfs:isDefinedBy: - is: predicate - target_classes: [Resource] - setters: [set_is_defined_by: Individual] # involves in punning + # rdfs:isDefinedBy: + # is: predicate + # target_classes: [Resource] + # setters: [set_is_defined_by: Individual] # involves in punning # ====================== diff --git a/lode/reader/loader.py b/lode/reader/loader.py index 606c926..16e9f3f 100644 --- a/lode/reader/loader.py +++ b/lode/reader/loader.py @@ -34,8 +34,8 @@ def load(self, source: str) -> None: self._load_from_url_with_content_negotiation(source) # ADD BY VALE TO FIX WINDOWS LOCAL BUG - COMMENTED FOR PRODUCTION - # elif os.path.isfile(source): - # self._load_from_local_file(source) + elif os.path.isfile(source): + self._load_from_local_file(source) else: # A value carrying a URL scheme that is not http(s) (file:, ftp:, ...) # must not be silently treated as a local path. Bare local paths diff --git a/lode/static/style.css b/lode/static/style.css index 76f58b2..d4ad004 100644 --- a/lode/static/style.css +++ b/lode/static/style.css @@ -1,5 +1,3 @@ -@import url('https://fonts.googleapis.com/css2?family=DM+Sans:ital,opsz,wght@0,9..40,100..1000;1,9..40,100..1000&family=Montserrat:ital,wght@0,100..900;1,100..900&display=swap'); - /* 1. General style ========================================================================== */ @@ -9,19 +7,111 @@ body { font-weight: 300; font-style: normal; font-size: 1rem; - font-family: sans-serif; /* LODE uses standard sans-serif */ + font-family: sans-serif; /* LODE and W3C use standard sans-serif */ color: black; background-color: white; } /* Headings - W3C Style Blue */ -h1, h2, h3, h4, -.h1, .h2, .h3, .h4 { - color: #005A9C !important; /* The classic W3C Blue */ - font-family: sans-serif; - font-weight: bold; - background: transparent; - border: none; +h1, h2, h3, h4, h5, h6 { + text-align: left; + color: #005A9C; +} + +h5 {font-size: 110%;} +h4 {font-size: 120%;} +h3 {font-size: 130%;} +h2 {font-size: 140%;} +h1 {font-size: 150%;} + +/* Semantic artefact metadata handling */ +dd { + line-height: 1.1rem; +} + +/* Semantic artefact metadata handling only for SINGLE RESOURCE */ + +.resource-frontmatter { + border-bottom: 1px solid #ccc; + padding-bottom: .75rem; + margin-bottom: .5rem; +} + +.resource-title { + color: #005A9C; + font-weight: 700; + font-size: 170%; + padding: 0; + margin: 0; +} + +.resource-subtitle { + color: #444; + font-style: italic; + font-size: 105%; + font-weight: 300; + margin:0; + padding:0; +} + +.resource-subtitle-ontology { + font-style: normal; + font-weight: 600; + color: #005A9C; +} + +.resource-meta-line { + display: flex; + align-items: center; + gap: .5rem; + font-size: .85rem; + color: #6c757d; +} + +.resource-meta-uri { + max-width: 60%; +} + +.resource-meta-link { + color: #005A9C !important; + text-decoration: none !important; +} +.resource-meta-link:hover { + background-color: #ffa !important; +} + +.metadata-accordion-toggle { + margin-left: auto; /* spinge il bottone a destra, come i controlli editoriali W3C */ +} + +.metadata-accordion-summary { + cursor: pointer; + list-style: none; +} +.metadata-accordion-summary::-webkit-details-marker { + display: none; +} + +.metadata-accordion-toggle { + display: inline-flex; + align-items: center; + gap: .35rem; + margin-left: .75rem; + border: 1px solid #ccc; + background: #f9f9f9; + color: #005A9C; + font-size: .85rem; + cursor: pointer; +} +.metadata-accordion-toggle:hover { + background: #005A9C; + color: #fff; +} +.metadata-accordion-toggle i { + transition: transform .2s ease; +} +.metadata-accordion[open] .metadata-accordion-toggle i { + transform: rotate(180deg); } /* INDEX PAGE STYLE */ @@ -122,11 +212,25 @@ button[type="submit"]:hover { /* code */ pre { - background-color: #f6e8dd; - border-radius: 20px; - border: 2px dotted #193564; - padding: 1rem; - color:#193564; + background-color: #f5f5f5; + border: 1px dashed #b0bfcf; + padding: 0.75rem 1rem; + color: #000; + font-family: monospace; + overflow-x: auto; + font-size: 0.9em; +} + +code { + font-family: monospace; + color: #000; +} + +/* dentro
, il code non deve riavere bordo/bg proprio */
+pre code {
+    background: none;
+    border: none;
+    padding: 0;
 }
 
 h1.display-5 {
@@ -230,42 +334,36 @@ a:visited {
 .text-info-emphasis {
     color: orange !important;
     font-size: 0.8em;
-    margin-left: -0.2em !important;
 }
 
 /* Relation */
 .op {
     color: navy !important;
     font-size: 0.8em !important;
-    margin-left: -0.2em !important;
 }
 
 /* Annotaion */
 .an {
     color: maroon !important;
     font-size: 0.8em !important;
-    margin-left: -0.2em !important;
 }
 
 /* Individual */
 .ni {
     color: brown !important;
     font-size: 0.8em !important;
-    margin-left: -0.2em !important;
 }
 
 /* Attributes */
 .dp {
     color: green !important;
     font-size: 0.8em !important;
-    margin-left: -0.2em !important;
 }
 
 /* language */
 .lan {
     color: slateblue !important;
     font-size: 0.8em !important;
-    margin-left: -0.2em !important;
 }
 
 /* 5. Definition Lists (The core of LODE data display)
@@ -369,9 +467,20 @@ code.bg-light {
     background-color: #F4FFFF !important;
 }
 
-/* statements */
+/* section for attributes */
+.attribute {
+    border-left: 3px solid #005A9C; /* stesso accento blu delle heading, non colore custom */
+}
+
 .statement {
-    background-color: rgb(235, 242, 250) !important;
+    background-color: white;      /* leggermente più neutro del tuo attuale */
+    font-size: 0.92em;
+}
+
+/* gli operatori logici dentro lo statement restano leggibili sul nuovo bg */
+.statement .logic {
+    color: purple;
+    font-weight: bold;
 }
 
 .logic {
@@ -408,6 +517,10 @@ code.bg-light {
     margin-bottom: 0 !important;
 }
 
+p {
+    padding-bottom: 0.5rem;
+}
+
 /* Exception: pre/code blocks must stay block even when last child */
 .inline-markdown > *:last-child:not(pre) {
     display: inline !important;
@@ -456,6 +569,11 @@ code.bg-light {
     margin-bottom: 0;
 }
 
+/* different styles to mark different type of entities - defined by the ontology itself or imported from external vocabs */
+.entity-internal { color: var(--lode-link, #005A9C); }
+.entity-external { color: var(--lode-external, #6c757d); }
+.entity-external .bi { font-size: .75em; opacity: .7; }
+
 /* ============================================================
    RDF provenance accordion
    ============================================================ */
@@ -495,11 +613,10 @@ code.bg-light {
 :root {
     --toc-sidebar-w: 18rem;
     --toc-sidebar-collapsed-w: 3.5rem;
-    --toc-sidebar-bg: #f7f9fc;
-    --toc-sidebar-border: #193564;
+    --toc-sidebar-border: navy;        /* as .card and .toc-card */
     --toc-sidebar-fg: #1a1a1a;
     --toc-sidebar-muted: #6c757d;
-    --toc-sidebar-accent: #005A9C;
+    --toc-sidebar-accent: #005A9C;     /* as titles */
 }
 
 /* The sidebar lives in the strip body already reserves (margin-left: 5rem).
@@ -509,16 +626,14 @@ body.toc-sidebar-closed { margin-left: 5rem; }
 
 .toc-sidebar {
     position: fixed;
-    top: 0;
-    left: 0;
-    bottom: 0;
+    top: 0; left: 0; bottom: 0;
     width: var(--toc-sidebar-w);
     border-right: 2px solid var(--toc-sidebar-border);
     z-index: 1030;
     display: flex;
     flex-direction: column;
     transition: transform .2s ease, width .2s ease;
-    box-shadow: 0 0 8px rgba(0,0,0,0.04);
+    /* rimosso: box-shadow */
 }
 
 /* Logo Powered by LODE nella sidebar chiusa */
@@ -564,10 +679,9 @@ body.toc-sidebar-closed { margin-left: 5rem; }
 .toc-sidebar-toggle {
     position: absolute;
     top: .5rem;
-    right: -1.1rem;
+    right: -1.6rem;
     width: 1.6rem;
     height: 1.6rem;
-    border-radius: 50%;
     border: 1px solid var(--toc-sidebar-border);
     background: #fff;
     color: var(--toc-sidebar-accent);
@@ -578,7 +692,7 @@ body.toc-sidebar-closed { margin-left: 5rem; }
     display: flex;
     align-items: center;
     justify-content: center;
-    box-shadow: 0 1px 2px rgba(0,0,0,0.08);
+    /* rimossi: border-radius: 50%; box-shadow */
 }
 .toc-sidebar-toggle:hover { background: var(--toc-sidebar-accent); color: #fff; }
 
@@ -622,7 +736,6 @@ body.toc-sidebar-closed { margin-left: 5rem; }
 .toc-sidebar-section-count {
     background: #e7eef7;
     color: var(--toc-sidebar-accent);
-    border-radius: 999px;
     padding: 0 .45rem;
     font-size: .72rem;
     font-weight: 700;
@@ -640,10 +753,8 @@ body.toc-sidebar-closed { margin-left: 5rem; }
 .toc-sidebar-list li { margin: 0; }
 .toc-sidebar-list a {
     display: block;
-    padding: .15rem .4rem;
     color: var(--toc-sidebar-fg);
     text-decoration: none;
-    border-radius: .2rem;
     white-space: nowrap;
     overflow: hidden;
     text-overflow: ellipsis;
diff --git a/lode/templates/_entity_card.html b/lode/templates/_entity_card.html
index 6d43000..1bba4a8 100644
--- a/lode/templates/_entity_card.html
+++ b/lode/templates/_entity_card.html
@@ -1,4 +1,7 @@
 {% macro render_value(v, depth=0) %}
+{% if v.link and 'erlangen' in v.link %}
+
+{% endif %}
     {% if v.type == 'Statement' and v.nested %}
         
{% set main = v.nested.main %} @@ -19,19 +22,17 @@ {% if v.link %} {% set precise_key = v.link ~ '|' ~ v_type %} - - {% if precise_key in anchor_map %} - {{ v.text }} + {% if v.is_external %} + {{ v.text }} + {% elif precise_key in anchor_map %} + {{ v.text }} {% elif v.link in anchor_map %} - {{ v.text }} - {% elif v.is_external %} -
{{ v.text }}
+ {{ v.text }} {% elif is_static %} - {{ v.text }} + {{ v.text }} {% else %} - {{ v.text }} + {{ v.text }} {% endif %} {% if v_type in type_map %} @@ -78,70 +79,71 @@

{% endif %}

-
-
- IRI: {{ item.uri }} - {% if is_static %} - +
+
+

IRI: {{ item.uri }} + {% if item.is_external %} + + {% elif is_static %} + {% else %} - + {% endif %} - -

+

- {% set priority_relations = ['Is Defined By', 'Comment', 'comment'] %} - {% set md_types = ['Literal', 'Str', 'literal', 'str', 'string'] %} + {% set priority_relations = ['Is Defined By', 'Comment', 'comment'] %} + {% set md_types = ['Literal', 'Str', 'literal', 'str', 'string'] %} - {% for key in priority_relations %} - {% if key in item.relations %} -
- {{ key }}: - {% set rel_vals = item.relations[key] %} -
- {% if rel_vals is iterable and rel_vals is not string %} - {% for val in rel_vals %} - {% set v_type = val.type.lower() if val.type else '' %} - {% set is_md = v_type in md_types %} + {% for key in priority_relations %} + {% if key in item.relations %} +
+
{{ key }}
+ {% set rel_vals = item.relations[key] %} +
+ {% if rel_vals is iterable and rel_vals is not string %} + {% for val in rel_vals %} + {% set v_type = val.type.lower() if val.type else '' %} + {% set is_md = v_type in md_types %} - {% set dep_class = 'text-decoration-line-through text-muted' if val.is_deprecated else '' %} - {% set dep_title = ' -- Deprecated ' if val.is_deprecated else '' %} + {% set dep_class = 'text-decoration-line-through text-muted' if val.is_deprecated else '' %} + {% set dep_title = ' -- Deprecated ' if val.is_deprecated else '' %} - {% if val.link %} - + {% if val.link %} + - {% else %} -
+ {% else %} +
-
{{ val.text }} +
{{ val.text }} +
+ {% if is_md and val.lan %} + {{ val.lan }} + {% endif %}
+ {% endif %} + {% endfor %} + {% else %} + {% set v_type = rel_vals.type.lower() if rel_vals.type else '' %} + {% set is_md = v_type in md_types %} + {% set dep_class = 'text-decoration-line-through text-muted' if rel_val.is_deprecated else '' %} + {% set dep_title = 'Deprecated ' if rel_val.is_deprecated else '' %} +
+ {{ rel_vals.text }} + {% if is_md and val.lan %} {{ val.lan }} {% endif %}
- {% endif %} - {% endfor %} - {% else %} - {% set v_type = rel_vals.type.lower() if rel_vals.type else '' %} - {% set is_md = v_type in md_types %} - {% set dep_class = 'text-decoration-line-through text-muted' if rel_val.is_deprecated else '' %} - {% set dep_title = 'Deprecated ' if rel_val.is_deprecated else '' %} -
- {{ rel_vals.text }} - - {% if is_md and val.lan %} - {{ val.lan }} - {% endif %} -
- {% endif %} + {% endif %} +
-
- {% endif %} - {% endfor %} + {% endif %} + {% endfor %} +
{% if item.relations %} {% set hidden_relations = ['Identifier', 'identifier'] %} @@ -152,10 +154,10 @@

{% endif %} {% endfor %} {% if visible_relations %} -
+
{% if item.characteristics %}
-
+
has Characteristics
@@ -172,104 +174,102 @@
{% endif %} {% for rel_name in visible_relations %} {% set rel_value = item.relations[rel_name] %} -
-
+
+
{{ rel_name }}
{% if rel_value is iterable and rel_value is not string %} -
- {% for rel_item in rel_value %} - {% if rel_item.parts %} -
- {% for part in rel_item.parts %} - {% set v_type = part.type.lower() if part.type else '' %} - {% set is_md = v_type in md_types %} - {% set dep_class = 'text-decoration-line-through text-muted' if part.is_deprecated else '' %} - {% set dep_title = ' -- Deprecated' if part.is_deprecated else '' %} + {% for rel_item in rel_value %} + {% if rel_item.parts %} +
+ {% for part in rel_item.parts %} + {% set v_type = part.type.lower() if part.type else '' %} + {% set is_md = v_type in md_types %} + {% set dep_class = 'text-decoration-line-through text-muted' if part.is_deprecated else '' %} + {% set dep_title = ' -- Deprecated' if part.is_deprecated else '' %} - {% if part.link %} -
- {% set precise_key = part.link ~ '|' ~ v_type %} - {% if precise_key in anchor_map %} - {{ part.text }} - {% elif part.link in anchor_map %} - {{ part.text }} - {% elif part.is_external %} - {{ part.text }} - {% elif is_static %} - {{ part.text }} - {% else %} - {{ part.text }} - {% endif %} + {% if part.link %} +
+ {% set precise_key = part.link ~ '|' ~ v_type %} + {% if precise_key in anchor_map %} + {{ part.text }} + {% elif part.link in anchor_map %} + {{ part.text }} + {% elif part.is_external %} + {{ part.text }} + {% elif is_static %} + {{ part.text }} + {% else %} + {{ part.text }} + {% endif %} - {% if v_type in type_map %} - {{ type_map[v_type].abb }} - {% endif %} -
- {% else %} - {% set v_type = part.type.lower() if part.type else '' %} - {% set dep_class = 'text-decoration-line-through text-muted' if part.is_deprecated else '' %} - {% set dep_title = ' -- Deprecated ' if part.is_deprecated else '' %} - {{ part.text }} - {% if v_type in type_map %} {{ type_map[v_type].abb }} {% endif %} - - {% if is_md and part.lan%} - {{ part.lan }} - {% endif %} +
+ {% else %} + {% set v_type = part.type.lower() if part.type else '' %} + {% set dep_class = 'text-decoration-line-through text-muted' if part.is_deprecated else '' %} + {% set dep_title = ' -- Deprecated ' if part.is_deprecated else '' %} + {{ part.text }} + + {% if v_type in type_map %} + {{ type_map[v_type].abb }} {% endif %} - {% endfor %} -
- - {% elif rel_item.link %} -
- {% set v_type = rel_item.type.lower() if rel_item.type else '' %} - {% set precise_key = rel_item.link ~ '|' ~ v_type %} - {% set is_md = v_type in md_types %} - {% set dep_class = 'text-decoration-line-through text-muted' if rel_item.is_deprecated else '' %} - {% set dep_title = ' -- Deprecated ' if rel_item.is_deprecated else '' %} - {% if precise_key in anchor_map %} - {{ rel_item.text }} - {% elif rel_item.link in anchor_map %} - {{ rel_item.text }} - {% elif rel_item.is_external %} - {{ rel_item.text }} - {% elif is_static %} - {{ rel_item.text }} - {% else %} - {{ rel_item.text }} + {% if is_md and part.lan%} + {{ part.lan }} + {% endif %} {% endif %} + {% endfor %} +
- {% if v_type in type_map %} - {{ type_map[v_type].abb }} - {% endif %} - {% if is_md and rel_item.lan %} - {{ rel_item.lan }} - {% endif %} - {% if not loop.last and not rel_value[loop.index].parts %},{% endif %} -
- {% else %} + {% elif rel_item.link %} +
{% set v_type = rel_item.type.lower() if rel_item.type else '' %} + {% set precise_key = rel_item.link ~ '|' ~ v_type %} {% set is_md = v_type in md_types %} -
{{ rel_item.text }}
+ {% set dep_class = 'text-decoration-line-through text-muted' if rel_item.is_deprecated else '' %} + {% set dep_title = ' -- Deprecated ' if rel_item.is_deprecated else '' %} + + {% if precise_key in anchor_map %} + {{ rel_item.text }} + {% elif rel_item.link in anchor_map %} + {{ rel_item.text }} + {% elif rel_item.is_external %} + {{ rel_item.text }} + {% elif is_static %} + {{ rel_item.text }} + {% else %} + {{ rel_item.text }} + {% endif %} + {% if v_type in type_map %} - {{ type_map[v_type].abb }}{% if not loop.last and not rel_value[loop.index].parts %}, {% endif %} + {{ type_map[v_type].abb }} {% endif %} {% if is_md and rel_item.lan %} - {{ rel_item.lan }}{% if not loop.last and not rel_value[loop.index].parts %},{% endif %} + {{ rel_item.lan }} {% endif %} + {% if not loop.last and not rel_value[loop.index].parts %},{% endif %} +
+ {% else %} + {% set v_type = rel_item.type.lower() if rel_item.type else '' %} + {% set is_md = v_type in md_types %} +
{{ rel_item.text }}
+ {% if v_type in type_map %} + {{ type_map[v_type].abb }}{% if not loop.last and not rel_value[loop.index].parts %}, {% endif %} + {% endif %} + {% if is_md and rel_item.lan %} + {{ rel_item.lan }}{% if not loop.last and not rel_value[loop.index].parts %},{% endif %} {% endif %} - {% endfor %} -
+ {% endif %} + {% endfor %} {% else %} {% set v_type = rel_value.type.lower() if rel_value.type else '' %} {% set is_md = v_type in md_types %} @@ -291,10 +291,10 @@
{% endif %} {% if item.statements %} -
+
{% for stat_name, stat_value in item.statements.items() %} -
-
+
+
{{ stat_name }}
@@ -315,8 +315,9 @@
{% endif %} - \ No newline at end of file diff --git a/lode/templates/_toc_sidebar.html b/lode/templates/_toc_sidebar.html index c1a9c2a..6c1c18b 100644 --- a/lode/templates/_toc_sidebar.html +++ b/lode/templates/_toc_sidebar.html @@ -6,7 +6,7 @@
{% endif %} + {% endfor %} + + {% endif %} + + {% endif %} {% if grouped_view and sections %} @@ -235,9 +266,13 @@

- ← Back to full documentation + {% if single_resource %} +
+ {% if is_static %} + ← Back to full documentation + {% else %} + ← Back to full documentation + {% endif %}
{% endif %} @@ -315,6 +350,13 @@

diff --git a/lode/viewer/base_viewer.py b/lode/viewer/base_viewer.py index e94f69f..9de108c 100644 --- a/lode/viewer/base_viewer.py +++ b/lode/viewer/base_viewer.py @@ -15,15 +15,32 @@ def __init__(self, reader): self.reader = reader self._cache = reader._instance_cache # it uses self._internal_iris = None - + self._ontology_ns = None + + def _get_ontology_ns(self) -> str: + if self._ontology_ns is None: + self._ontology_ns = '' + for inst in self.get_all_instances(): + if isinstance(inst, Model): + nid = inst.get_has_identifier() + if nid: + self._ontology_ns = nid if nid.endswith(('/', '#')) else nid + '/' + break + return self._ontology_ns + + def _has_local_triples(self, uri) -> bool: + if not uri: + return False + return (URIRef(str(uri)), None, None) in self.reader._graph + def _is_internal(self, uri) -> bool: if not uri: return False if self._internal_iris is None: self._internal_iris = { str(i.get_has_identifier()) - for i in self.get_toc_instances() # <-- NON get_all_instances() - if hasattr(i, 'get_has_identifier') and i.get_has_identifier() + for i in self.get_toc_instances() + if i.get_has_identifier() } return str(uri) in self._internal_iris @@ -288,6 +305,7 @@ def _format_entities(self, instances: List, language: Optional[str] = None) -> L 'characteristics': characteristics, 'is_deprecated': bool(is_dep), 'provenance': self._build_provenance_subgraph(instance), + 'is_external': not self._is_internal(uri), }) entities.sort(key=lambda x: (x['label'] or x['uri']).lower()) @@ -410,6 +428,7 @@ def _resolve_resource_value(self, obj, language=None) -> dict: 'parts': None, # This key is for restrictions 'type': None, 'is_deprecated': False, + 'is_imported': False, 'is_external': False, } @@ -432,7 +451,8 @@ def _resolve_resource_value(self, obj, language=None) -> dict: handler_dic['parts'] = parts handler_dic['text'] = "".join([p['text'] for p in parts if p.get('text')]) handler_dic['link'] = None # Forces Jinja to ignore the blank node URI - handler_dic['is_external'] = not self._is_internal(handler_dic['link']) + handler_dic['is_external'] = False + handler_dic['is_imported'] = False handler_dic['type'] = obj_type return handler_dic @@ -510,10 +530,13 @@ def _resolve_resource_value(self, obj, language=None) -> dict: # --- 5. Normal Resource Handling (Concepts, Properties, Individuals) --- if hasattr(obj, 'get_has_identifier'): handler_dic['link'] = obj.get_has_identifier() - handler_dic['is_external'] = not self._is_internal(handler_dic['link']) - is_dep = getattr(obj, 'get_is_deprecated')() if hasattr(obj, - 'get_is_deprecated') else getattr(obj, 'is_deprecated', - False) + link = handler_dic['link'] + ns = self._get_ontology_ns() + internal = self._is_internal(link) + native = bool(link) and bool(ns) and str(link).startswith(ns) + handler_dic['is_external'] = not internal + handler_dic['is_imported'] = internal and not native + is_dep = getattr(obj, 'get_is_deprecated')() if hasattr(obj, 'get_is_deprecated') else getattr(obj, 'is_deprecated', False) handler_dic['is_deprecated'] = bool(is_dep) try: @@ -580,7 +603,12 @@ def _clean_name(self, name: str) -> str: name = name.replace('_', ' ') # Strip extra spaces - return ' '.join(name.split()) + name = ' '.join(name.split()) + + # lowercase everything + name = name.lower() + + return name def _parse_restriction(self, obj, language=None) -> list: """ @@ -825,10 +853,11 @@ def node_dict(uri, visited): return tree # ========== PROVENANCE: subgraph serialisation for each card ========== - + def _build_provenance_subgraph(self, instance) -> Dict[str, str]: - """Get the provenance subgraph from the reader and serialize it.""" sub = self.reader.get_provenance_subgraph(instance) + if not any(True for _ in sub): + return {} return { 'turtle': self._safe_serialize(sub, 'turtle'), 'rdfxml': self._safe_serialize(sub, 'xml'), diff --git a/pyproject.toml b/pyproject.toml index 7dbcb3d..8e88b15 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,7 @@ dependencies = [ "jinja2>=3.1.2", "requests>=2.31.0", "owlready2>=0.50", + "minify-html>=0.18.1", ] # AGGIUNTO @@ -53,4 +54,4 @@ packages = ["lode"] # AGGIUNTO - include template e static nel wheel [tool.hatch.build.targets.wheel.shared-data] "lode/templates" = "lode/templates" -"lode/static" = "lode/static" \ No newline at end of file +"lode/static" = "lode/static" diff --git a/tests/test_api.py b/tests/test_api.py index d35147c..b951b02 100644 --- a/tests/test_api.py +++ b/tests/test_api.py @@ -157,4 +157,32 @@ def fake_load(self, graph_path, read_as, **kw): assert seen[0] == "http://x/o" assert seen[1].endswith(".rdf") and seen[1] != "http://x/o" # served from spool - assert seen[2] == "http://x/o" # cache=false refetched \ No newline at end of file + assert seen[2] == "http://x/o" # cache=false refetched + +# --- HTML output quality ------------------------------------------------------ +import gzip + +def test_html_size_and_whitespace(patched_url): + """Peso HTML e whitespace: minify deve tenere il whitespace basso.""" + resp = client.get("/extract", params={"read_as": "owl", "url": FABIO_URL}) + html = resp.text + + size_kb = len(resp.content) / 1024 + stripped = re.sub(r'>\s+<', '><', html) + ws = (len(html.encode()) - len(stripped.encode())) / len(html.encode()) + + print(f"\nsize: {size_kb:.0f} KB | whitespace: {ws:.1%}") + assert size_kb < 6500 + assert ws < 0.05, f"whitespace {ws:.1%} — minify non attivo?" + + +def test_gzip_compression(patched_url): + """La response deve arrivare gzippata e comprimere bene.""" + resp = client.get("/extract", params={"read_as": "owl", "url": FABIO_URL}, + headers={"Accept-Encoding": "gzip"}) + html = resp.content + on_wire = len(gzip.compress(html)) + + print(f"\ndisco: {len(html)/1024:.0f} KB | wire: {on_wire/1024:.0f} KB | ratio: {on_wire/len(html):.1%}") + assert resp.headers.get("content-encoding") == "gzip" + assert on_wire < len(html) * 0.3 \ No newline at end of file diff --git a/tests/test_static_builder.py b/tests/test_static_builder.py new file mode 100644 index 0000000..3538af5 --- /dev/null +++ b/tests/test_static_builder.py @@ -0,0 +1,140 @@ +"""Static-build integrity tests over the SPAR corpus (ontologies_spar.json). + +Covers the features added to builder.py / base_viewer.py: + - internal/external classification (_is_internal / _has_local_triples) + - per-prefix folder layout (_rel_slug), no local-name collisions + - file generation filter: entities with local triples get HTML + serializations + - INVARIANT: every generated HTML resource has its .ttl/.rdf/.n3 siblings + - internal links resolve to existing files (no 404 in the static tree) +""" +import json +import re +from pathlib import Path + +import pytest +from rdflib import Graph + +from lode.reader import Reader +from lode.builder import build_html, _rel_slug, _prefix_map +from rdflib import URIRef + +ONTOLOGIES_PATH = Path(__file__).parent / "ontologies_spar.json" +URIS = [e["uri"] for e in json.loads(ONTOLOGIES_PATH.read_text(encoding="utf-8"))["uris"]] + + +def _load(uri): + r = Reader() + r.load_instances(uri, "owl") + return r.get_viewer(), r + + +@pytest.fixture(scope="module", params=URIS, ids=lambda u: u.rstrip("/").split("/")[-1]) +def built(request, tmp_path_factory): + """Load one ontology and build it into a temp dir. Reused by all tests.""" + uri = request.param + try: + viewer, reader = _load(uri) + except Exception as e: + pytest.skip(f"load failed for {uri}: {e}") + out = tmp_path_factory.mktemp("docs") + build_html(viewer, out, reader=reader) + return {"uri": uri, "viewer": viewer, "reader": reader, "out": out} + + +# --- build structure --- + +def test_index_and_ontology_serializations(built): + out = built["out"] + assert (out / "index.html").exists() + for ext in ("ttl", "rdf", "n3"): + assert (out / f"ontology.{ext}").exists(), f"missing ontology.{ext}" + + +def test_resources_folder_created(built): + assert (built["out"] / "resources").exists() + + +def test_index_export_base(built): + """Index header must export the whole graph (ontology.*), not a single resource.""" + html = (built["out"] / "index.html").read_text(encoding="utf-8") + assert "ontology.ttl" in html + + +# --- INVARIANT: every HTML resource has all three serializations --- + +def test_every_html_resource_has_all_formats(built): + res = built["out"] / "resources" + html_files = list(res.rglob("*.html")) + assert html_files, f"no resource pages generated for {built['uri']}" + + missing = [] + for html in html_files: + for ext in ("ttl", "rdf", "n3"): + sibling = html.with_suffix(f".{ext}") + if not sibling.exists(): + missing.append(str(sibling.relative_to(built["out"]))) + + assert not missing, "missing serializations:\n" + "\n".join(missing) + + +def test_serializations_parse(built): + """Every generated .ttl must be valid Turtle (non-empty, reparseable).""" + for ttl in (built["out"] / "resources").rglob("*.ttl"): + Graph().parse(str(ttl), format="turtle") + + +# --- internal/external classification --- + +def test_local_triples_implies_internal(built): + """The real invariant: a ToC entity that is subject of triples is internal.""" + viewer = built["viewer"] + checked = 0 + for i in viewer.get_toc_instances(): + uri = i.get_has_identifier() + if uri and viewer._has_local_triples(uri): + assert viewer._is_internal(uri), f"has triples but external: {uri}" + checked += 1 + assert checked, f"no internal entities for {built['uri']}" + +def test_object_only_has_no_page(built): + """A resource neither native to the ontology nor subject of any local triple + (i.e. it appears only as an object) must not get its own page. Same + materialization criterion as the builder, so test and builder cannot diverge.""" + viewer = built["viewer"] + res = built["out"] / "resources" + graph = viewer.reader._graph + ontology_ns = viewer._get_ontology_ns() + + for i in viewer.get_toc_instances(): + uri = i.get_has_identifier() + if not uri: + continue + materialized = str(uri).startswith(ontology_ns) or viewer._has_local_triples(uri) + if not materialized: + slug = _rel_slug(uri, graph) + assert not (res / f"{slug}.html").exists(), f"page for non-materialized: {uri}" + +# --- slug: no collisions across generated pages --- + +def test_no_slug_collisions(built): + """Every generated HTML path is unique (per-prefix layout guarantees it).""" + res = built["out"] / "resources" + paths = [p.relative_to(res).as_posix() for p in res.rglob("*.html")] + assert len(paths) == len(set(paths)), "duplicate resource paths generated" + + +# --- link integrity: no broken internal links in the static tree --- + +def 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"httpcore" }, + { name = "idna" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/b1/df/48c586a5fe32a0f01324ee087459e112ebb7224f646c0b5023f5e79e9956/httpx-0.28.1.tar.gz", hash = "sha256:75e98c5f16b0f35b567856f597f06ff2270a374470a5c2392242528e3e3e42fc", size = 141406, upload-time = "2024-12-06T15:37:23.222Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/2a/39/e50c7c3a983047577ee07d2a9e53faf5a69493943ec3f6a384bdc792deb2/httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad", size = 73517, upload-time = "2024-12-06T15:37:21.509Z" }, +] + [[package]] name = "idna" version = "3.11" @@ -435,6 +463,7 @@ dependencies = [ [package.dev-dependencies] dev = [ { name = "genbadge", extra = ["coverage"] }, + { name = "httpx" }, { name = "pytest" }, { name = "pytest-cov" }, ] @@ -455,6 +484,7 @@ requires-dist = [ [package.metadata.requires-dev] dev = [ { name = "genbadge", extras = ["coverage"], specifier = ">=1.1.3" }, + { name = "httpx", specifier = ">=0.28.1" }, { name = "pytest", specifier = ">=8.0.0" }, { name = "pytest-cov", specifier = ">=7.0.0" }, ] From b8f2667059eaf87e20cdc79713099efc9d2f6e36 Mon Sep 17 00:00:00 2001 From: Valentina Date: Wed, 8 Jul 2026 18:31:24 +0200 Subject: [PATCH 4/9] fix: commented local fix for windows --- lode/reader/loader.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/lode/reader/loader.py b/lode/reader/loader.py index 16e9f3f..606c926 100644 --- a/lode/reader/loader.py +++ b/lode/reader/loader.py @@ -34,8 +34,8 @@ def load(self, source: str) -> None: self._load_from_url_with_content_negotiation(source) # ADD BY VALE TO FIX WINDOWS LOCAL BUG - COMMENTED FOR PRODUCTION - elif os.path.isfile(source): - self._load_from_local_file(source) + # elif os.path.isfile(source): + # self._load_from_local_file(source) else: # A value carrying a URL scheme that is not http(s) (file:, ftp:, ...) # must not be silently treated as a local path. Bare local paths From c8308c7f82f53d9bc4b4c31fe73b810edd65abb1 Mon Sep 17 00:00:00 2001 From: Valentina Date: Wed, 8 Jul 2026 18:42:19 +0200 Subject: [PATCH 5/9] update: new version --- lode/reader/loader.py | 4 ++-- pyproject.toml | 2 +- uv.lock | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/lode/reader/loader.py b/lode/reader/loader.py index 606c926..16e9f3f 100644 --- a/lode/reader/loader.py +++ b/lode/reader/loader.py @@ -34,8 +34,8 @@ def load(self, source: str) -> None: self._load_from_url_with_content_negotiation(source) # ADD BY VALE TO FIX WINDOWS LOCAL BUG - COMMENTED FOR PRODUCTION - # elif os.path.isfile(source): - # self._load_from_local_file(source) + elif os.path.isfile(source): + self._load_from_local_file(source) else: # A value carrying a URL scheme that is not http(s) (file:, ftp:, ...) # must not be silently treated as a local path. Bare local paths diff --git a/pyproject.toml b/pyproject.toml index 1ee2553..b39436b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "lode" -version = "0.3.1" +version = "0.3.2" description = "New reengineered version of LODE, maintained by OpenCitations" authors = [{name = "Valentina Pasqual, Silvio Peroni", email = "valentina.pasqual2@unibo.it"}] readme = "README.md" diff --git a/uv.lock b/uv.lock index 044e066..085345e 100644 --- a/uv.lock +++ b/uv.lock @@ -446,7 +446,7 @@ wheels = [ [[package]] name = "lode" -version = "0.3.1" +version = "0.3.2" source = { editable = "." } dependencies = [ { name = "fastapi" }, From 2a422716da1947cc43facf0324f3371b4f49632e Mon Sep 17 00:00:00 2001 From: Valentina Date: Thu, 9 Jul 2026 15:30:52 +0200 Subject: [PATCH 6/9] fix: last tests fixes for owl integrity --- lode/reader/logic/base_logic.py | 4 ++++ lode/reader/logic/owl_logic.py | 2 +- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/lode/reader/logic/base_logic.py b/lode/reader/logic/base_logic.py index 9e514b9..85b862d 100644 --- a/lode/reader/logic/base_logic.py +++ b/lode/reader/logic/base_logic.py @@ -517,6 +517,10 @@ def _convert_collection_to_container(self, collection_uri): return container def _create_statement_for_triple(self, subj, pred, obj): + + if pred in self._property_mapping: + return + statement = Statement() stmt_bnode = BNode() statement.set_has_identifier(str(stmt_bnode)) diff --git a/lode/reader/logic/owl_logic.py b/lode/reader/logic/owl_logic.py index 8b0a07f..e2d1953 100644 --- a/lode/reader/logic/owl_logic.py +++ b/lode/reader/logic/owl_logic.py @@ -971,7 +971,7 @@ def _create_statement_for_triple(self, subj, pred, obj): may have been created here for the first time, after phase3 defaults have already run. """ - if pred == RDF.type: + if pred == RDF.type or pred in self._property_mapping: return # Subject: an unmapped structured BNode is a Statement, not an Individual. From 358b5b25c03df819916a0b66b15dd776ba6f5228 Mon Sep 17 00:00:00 2001 From: Valentina Date: Thu, 9 Jul 2026 15:32:42 +0200 Subject: [PATCH 7/9] update: new version --- pyproject.toml | 2 +- uv.lock | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index b39436b..af15e15 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "lode" -version = "0.3.2" +version = "0.3.3" description = "New reengineered version of LODE, maintained by OpenCitations" authors = [{name = "Valentina Pasqual, Silvio Peroni", email = "valentina.pasqual2@unibo.it"}] readme = "README.md" diff --git a/uv.lock b/uv.lock index 085345e..8f8e741 100644 --- a/uv.lock +++ b/uv.lock @@ -446,7 +446,7 @@ wheels = [ [[package]] name = "lode" -version = "0.3.2" +version = "0.3.3" source = { editable = "." } dependencies = [ { name = "fastapi" }, From 941c7d8dd2603080a074a7dd42da556761a90035 Mon Sep 17 00:00:00 2001 From: Valentina Date: Thu, 9 Jul 2026 15:44:32 +0200 Subject: [PATCH 8/9] fix: rm wrong old tests on owl logic --- tests/test_owl_logic.py | 17 ----------------- 1 file changed, 17 deletions(-) diff --git a/tests/test_owl_logic.py b/tests/test_owl_logic.py index d65a447..aa5f9b4 100644 --- a/tests/test_owl_logic.py +++ b/tests/test_owl_logic.py @@ -1565,23 +1565,6 @@ def test_handler_exception_triple_not_in_triples_map(self): triples = logic._triples_map.get(inst, set()) assert not any(p == OWL.propertyChainAxiom for _, p, _ in triples) - def test_handler_exception_triple_becomes_statement(self): - """When a handler raises an exception, the unmapped triple must produce - a Statement in phase6.""" - logic = _make_logic([ - (EX.myRel, RDF.type, OWL.ObjectProperty), - (EX.myRel, OWL.propertyChainAxiom, EX.notAList), - ]) - _run_all(logic) - stmts = _instances_of(logic, Statement) - pred_ids = [ - s.get_has_predicate().get_has_identifier() - for s in stmts - if s.get_has_predicate() is not None - ] - assert str(OWL.propertyChainAxiom) in pred_ids - - # =========================================================================== # CACHE EDGE CASES # =========================================================================== From 72f1d9851942fe794c21e9a9bea95676b850ec26 Mon Sep 17 00:00:00 2001 From: Valentina Date: Thu, 9 Jul 2026 17:49:56 +0200 Subject: [PATCH 9/9] update: new search functionality in viewer --- lode/models/concept.py | 9 +++ lode/models/property.py | 3 - lode/models/resource.py | 12 +++- lode/reader/logic/owl_logic.py | 61 +------------------ lode/static/style.css | 79 +++++++++++++++++++++++- lode/templates/viewer.html | 107 +++++++++++++++++++++++++++++++++ pyproject.toml | 2 +- 7 files changed, 209 insertions(+), 64 deletions(-) diff --git a/lode/models/concept.py b/lode/models/concept.py index e9ffde6..434049e 100644 --- a/lode/models/concept.py +++ b/lode/models/concept.py @@ -18,6 +18,8 @@ def __init__(self, **kwargs): self.has_close_match = [] # 0..* self.has_key = [] # 0..* self.individuals_with_this_type = [] # 0..* (inverso di Individual.has_type) + self.is_in_domain_of = [] # 0..* + def set_has_key(self, prop): @@ -115,4 +117,11 @@ def set_individuals_with_this_type(self, individual): def get_individuals_with_this_type(self): """Restituisce la lista individuals_with_this_type.""" return list(self.individuals_with_this_type) + + def set_is_in_domain_of(self, prop): + if prop not in self.is_in_domain_of: + self.is_in_domain_of.append(prop) + + def get_is_in_domain_of(self): + return list(self.is_in_domain_of) \ No newline at end of file diff --git a/lode/models/property.py b/lode/models/property.py index 20e5e67..786f3cf 100644 --- a/lode/models/property.py +++ b/lode/models/property.py @@ -16,11 +16,9 @@ def __init__(self, **kwargs): self.is_equivalent_to = [] # Relation with Resource (1..*) - # Nell'extractor - default per OWL ontologies = OWL.Thing self.has_range = [] # Relations with Concept (1..*) - # Nell'extractor - default per OWL ontologies = OWL.Thing self.has_domain = [] # Metodi per is_functional @@ -50,7 +48,6 @@ def get_is_disjoint_with(self): """Restituisce una copia della lista is_disjoint_with""" return list(set(self.is_disjoint_with)) - # Metodi per is_equivalent_to def set_is_equivalent_to(self, property_obj): """Aggiunge una property a is_equivalent_to""" self.is_equivalent_to.append(property_obj) diff --git a/lode/models/resource.py b/lode/models/resource.py index 7dbd661..eb6a535 100644 --- a/lode/models/resource.py +++ b/lode/models/resource.py @@ -35,6 +35,9 @@ def __init__(self): # Relation with Models (1..*) self.is_included_in = [] # NEEDS TO BE CHECKED + # Relation with Resources (0..*) + self.is_in_range_of = [] + def set_has_identifier(self, value): """Imposta has_identifier""" self.has_identifier = value @@ -212,4 +215,11 @@ def get_also_defined_as(self): def set_also_defined_as(self, resource): """Aggiunge un Resource alla lista di also_defined_as""" - self.also_defined_as.append(resource) \ No newline at end of file + self.also_defined_as.append(resource) + + def set_is_in_range_of(self, prop): + if prop not in self.is_in_range_of: + self.is_in_range_of.append(prop) + + def get_is_in_range_of(self): + return list(self.is_in_range_of) \ No newline at end of file diff --git a/lode/reader/logic/owl_logic.py b/lode/reader/logic/owl_logic.py index e2d1953..a58e0f8 100644 --- a/lode/reader/logic/owl_logic.py +++ b/lode/reader/logic/owl_logic.py @@ -152,18 +152,6 @@ def phase5_fallback(self): # Remove generic Property, keep the concrete one self._instance_cache[uri].discard(instance) else: - # # No concrete type found — infer and reclassify - # inferred = self._infer_property_type(instance) - # new = inferred() - # new.__dict__.update(instance.__dict__) - # self._instance_cache[uri].discard(instance) - # self._instance_cache[uri].add(new) - # if instance in self._triples_map: - # self._triples_map[new] = self._triples_map.pop(instance) - # self.populate_instance(new, uri) - # # new, reclassified instance after reclassification - # instance = new - inferred = self._infer_property_type(instance) old_dict = instance.__dict__.copy() instance.__class__ = inferred @@ -173,57 +161,13 @@ def phase5_fallback(self): self._enrich_or_apply_owl_defaults(instance, uri) - # def _infer_property_type(self, instance) -> type: - # """ - # Infers the concrete subtype (Relation, Attribute, Annotation) for a - # generic Property instance (not better classified) - - # Strategy (in order): - # 1. Traverse UP the subPropertyOf chain: if any ancestor has a concrete - # type, inherit it (if A subPropertyOf B and B is Relation, A is Relation). - # 2. Traverse DOWN by scanning the cache for properties that declare this - # instance as their superproperty: if any subproperty has a concrete - # type, inherit it (if B is Relation and B subPropertyOf A, A is Relation). - # 3. Fall back to Annotation if no type can be inferred from the hierarchy. - # Annotation makes no domain/range assumptions and is valid for any - # subject/object combination. - # """ - - # visited = set() - # queue = [instance] - - # # (1) Goes up and down subproperty hierarchy - # # (1.1) Traverse UP superproperties - # while queue: - # current = queue.pop(0) - # if id(current) in visited: - # continue - # visited.add(id(current)) - - # if type(current) in (Relation, Attribute, Annotation): - # return type(current) - - # for sup in (current.get_is_sub_property_of() or []): - # queue.append(sup) - - # # (1.2) Traverse DOWN subproperties - # for instances_set in self._instance_cache.values(): - # for inst in instances_set: - # if isinstance(inst, Property): - # for sup in (inst.get_is_sub_property_of() or []): - # if sup is instance: - # t = self._infer_property_type(inst) - # if t in (Relation, Attribute, Annotation): - # return t - - # # (2) fallback - # return Annotation - def handle_domain(self, instance, uri, predicate, obj, setter=None): concept = self.get_or_create(obj, Concept) if concept is None: concept = self._force_as_concept(obj) instance.set_has_domain(concept) + concept.set_is_in_domain_of(instance) + def handle_range(self, instance, uri, predicate, obj, setter=None): if isinstance(instance, Attribute): @@ -233,6 +177,7 @@ def handle_range(self, instance, uri, predicate, obj, setter=None): if resource is None: resource = self._force_as_concept(obj) instance.set_has_range(resource) + resource.set_is_in_range_of(instance) def handle_equivalent_class(self, instance, uri, predicate, obj, setter=None): """§9.1.2 EquivalentClasses — simmetria garantita.""" diff --git a/lode/static/style.css b/lode/static/style.css index d4ad004..57242e2 100644 --- a/lode/static/style.css +++ b/lode/static/style.css @@ -12,6 +12,84 @@ body { background-color: white; } +/* SEARCHBAR */ +.toc-float-search { + position: fixed; + top: 50%; + right: 1.5rem; + transform: translateY(-50%); + z-index: 1050; + display: flex; + align-items: center; +} + +.toc-float-search-toggle { + width: 42px; + height: 42px; + border-radius: 50%; + border: 1px solid navy; + background: #fff; + color: #005A9C; + box-shadow: 0 1px 4px rgba(0,0,0,0.2); + display: flex; + align-items: center; + justify-content: center; + cursor: pointer; +} + +.toc-float-search-panel { + display: flex; + align-items: center; + gap: 0.4rem; + width: 0; + opacity: 0; + overflow: hidden; + transition: width 0.2s ease, opacity 0.2s ease; +} + +.toc-float-search.open .toc-float-search-panel { + width: 320px; + opacity: 1; + margin-right: 0.5rem; +} + +.toc-float-search-input { + border: 1px solid #ccc; + border-radius: 4px; + padding: 6px 10px; + font-size: 0.85rem; + flex: 1 1 auto; + min-width: 0; +} + +.toc-search-dim { + opacity: 0.35; +} + +.toc-float-search-count { + font-size: 0.8rem; + color: #6c757d; + min-width: 2.5rem; + text-align: center; +} + +.toc-float-search-nav { + width: 28px; + height: 28px; + border: 1px solid #ccc; + background: #fff; + color: #005A9C; + display: flex; + align-items: center; + justify-content: center; + cursor: pointer; +} + +.toc-search-current { + outline: 3px solid #005A9C; + outline-offset: 2px; +} + /* Headings - W3C Style Blue */ h1, h2, h3, h4, h5, h6 { text-align: left; @@ -135,7 +213,6 @@ button[type="submit"] { cursor: pointer; border-radius: 50px; } -/* blue = #193564 red = ##F3563C beige= #F6E8DD , white = white*/ button[type="submit"]:hover { background-color: #193564; diff --git a/lode/templates/viewer.html b/lode/templates/viewer.html index cb1a2b9..9e73e17 100644 --- a/lode/templates/viewer.html +++ b/lode/templates/viewer.html @@ -48,6 +48,23 @@ {% include '_toc_sidebar.html' %} + +
{% if warnings %}
@@ -357,6 +374,96 @@