sequence search using phmmer fails I believe because phmmer has moved to https by default. The query returns
"error": {
"msg": "Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer",
"trace": "java.io.IOException: Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1876)\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1474)\n\tat sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.getJson(PhmmerClient.java:67)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.access$4(PhmmerClient.java:66)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResultsJson(PhmmerClient.java:34)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResults(PhmmerClient.java:21)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerJob.runJob(PhmmerJob.java:23)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerXJoinResultsFactory.getResults(PhmmerXJoinResultsFactory.java:70)\n\tat org.apache.solr.search.xjoin.XJoinSearchComponent.prepare(XJoinSearchComponent.java:115)\n\tat org.apache.solr.handler.component.SearchHandler.handleRequestBody(SearchHandler.java:268)\n\tat org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:152)\n\tat org.apache.solr.core.SolrCore.execute(SolrCore.java:2227)\n\tat org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:658)\n\tat org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:464)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:303)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:254)\n\tat org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1691)\n\tat org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:582)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)\n\tat org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)\n\tat org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)\n\tat org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:512)\n\tat org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)\n\tat org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:213)\n\tat org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:119)\n\tat org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)\n\tat org.eclipse.jetty.server.Server.handle(Server.java:534)\n\tat org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320)\n\tat org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)\n\tat org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)\n\tat org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)\n\tat org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)\n\tat java.lang.Thread.run(Thread.java:748)\n",
"code": 500
sequence search using phmmer fails I believe because phmmer has moved to https by default. The query returns
"error": {
"msg": "Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer",
"trace": "java.io.IOException: Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1876)\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1474)\n\tat sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.getJson(PhmmerClient.java:67)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.access$4(PhmmerClient.java:66)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResultsJson(PhmmerClient.java:34)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResults(PhmmerClient.java:21)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerJob.runJob(PhmmerJob.java:23)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerXJoinResultsFactory.getResults(PhmmerXJoinResultsFactory.java:70)\n\tat org.apache.solr.search.xjoin.XJoinSearchComponent.prepare(XJoinSearchComponent.java:115)\n\tat org.apache.solr.handler.component.SearchHandler.handleRequestBody(SearchHandler.java:268)\n\tat org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:152)\n\tat org.apache.solr.core.SolrCore.execute(SolrCore.java:2227)\n\tat org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:658)\n\tat org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:464)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:303)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:254)\n\tat org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1691)\n\tat org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:582)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)\n\tat org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)\n\tat org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)\n\tat org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:512)\n\tat org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)\n\tat org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:213)\n\tat org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:119)\n\tat org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)\n\tat org.eclipse.jetty.server.Server.handle(Server.java:534)\n\tat org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320)\n\tat org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)\n\tat org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)\n\tat org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)\n\tat org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)\n\tat java.lang.Thread.run(Thread.java:748)\n",
"code": 500