Merge mVIRs development version

[valentynbez]

[hjruscheweyh]

@hjruscheweyh

I have updated a small part of mVIRs by not loading hard-clip data into memory. They re not used in the downstream of the analysis and dont need to be loaded. I will need to push this into the current version of mVIRs.

[valentynbez]

Please do.
I had initial ideas about the proper redesign of mVIRs and possibly an extension to long reads.
However, the momentum behind the dev project is very low.